Gene capan_pan_p019823


Sequence ID capan_pan_p019823  add to my list
Species Capsicum annuum
Alias No gene alias
Pangenome status Core (3/3)
Length 167aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 167 amino acids

>capan_pan_p019823_CAPAN
MRGFMCQPEVSTAVCLSCDSRSVVVPVAQRRMSMEEHAKLINKCSTRLGDVPRTLDSMPI
SRRSRNVAAAAAVGSSVLTISKRDQENGSKIVPSLPLSDNSFQVVVMRVSLHCQGCAGKV
KKHLSKMEGVTSFSIELDRQRVTVMGHVSPVGVLESISKVKRAEFWP


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for capan_pan_p019823



Represented sequence(s):
CAPAN_CM334_v2.0
CA.PGAv.1.6.scaffold523.90
CAPAN_Glabriusculum_Chiltepin_v2.0
Capang01g004568
CAPAN_Zunla_1_v2.0
Capana08g002005
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Bv8_190260_chqz.t1 orthology 0.83 3 115 2.83e-33
PGSC0003DMP400022303 orthology 0.0745 1 292 6.13e-103
Solyc01g105000.2.1 orthology 0.132 2 268 3.42e-93
capan_pan_p036114 ultra-paralogy 0.126 0 - -
capan_pan_p041384 ultra-paralogy 0.117 0 - -
evm_27.model.AmTr_v1.0_scaffold00010.206 orthology 0.841 4 139 7.89e-43