Gene cocnu_pan_p002116
| Sequence ID | cocnu_pan_p002116 add to my list |
|---|---|
| Species | Cocos nucifera |
| Alias | No gene alias |
| Pangenome status | Core (2/2) |
| Length | 302aa |
Length: 302 amino acids
>cocnu_pan_p002116_COCNU MVAFKETELLLDGETMMDDDVEDIDDEELVSESESEPEEVALAEPAKNAVYNKEGLLEKL DDISWPENVEWIHKLTVDHDQENEIDANDDLARELAFYTQALDGTHQAFEKLQPMGIPFL RPPDYYAEMVKSDTHMLKIKGKLLTKKKKMEEAEERKKAREAKKIAKEVQALKTKERAKR KKEEIESVKKWRKQRQQSGFARGKDDEVDSSFDAEMDFERTKKRRPGVAPGDRSGGLARK RGNEKGRKKREFRDTKFGHGGRKGMRKQNTVETTNDFRGFNVGGMSKNKMRKGRVMQKEA RA
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Unknown function duf1138 family
GP002478 |
Unknown function duf1138 family |
| 2 | GP018276 | Unannotated cluster |
| 3 | GP042981 | Unannotated cluster |
| 4 | GP075980 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Eukaryotic rRNA processing
IPR008610
|
Eukaryotic rRNA processing | Family |
Figure 1: IPR domains for cocnu_pan_p002116
Represented sequence(s):
| 1. | 2. | 3. | |
|---|---|---|---|
| 1. COCNU_HT001RO02_U01PF12000.2 | 0.00 | -0.00 | 1.73 |
| 2. COCNU_HT001RO02_U01PF12000.1 | -0.00 | 0.00 | 1.73 |
| 3. Cnu_29684-RA | 1.73 | 1.73 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Dr07834 | orthology | 0.416 | 3 | 299 | 3.11e-101 |
| XP_010927787.1 | orthology | 0.104 | 1 | - | - |
| XP_010927788.1 | orthology | 0.104 | 1 | 406 | 8e-144 |
| musac_pan_p025447 | orthology | 0.267 | 3 | - | - |
| musac_pan_p028206 | orthology | 0.294 | 3 | 352 | 1.33e-122 |
| musac_pan_p038614 | orthology | 0.337 | 3 | - | - |