Gene cocnu_pan_p004474
| Sequence ID | cocnu_pan_p004474 add to my list | ||
|---|---|---|---|
| Species | Cocos nucifera | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 252aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 252 amino acids
>cocnu_pan_p004474_COCNU MVPELEKAQVTELHVRMDCNGCVQKIKKAMHGIDGVYDIYVDSAQQKLTVVGRADPEKIV KAIKKTGKIATICSHTEQVGPSGSEQPPSTEAASSSNPPATGDADQPPSEAPPAPPAEPL QEAPSGETKAPEVNPSPEAKDATPTESKDVEEIHMVHHYPHSYIYREHWNQYPTSGSEIR HEAPYHVAHSYSSYRPSPHATGYGHHQSAPQDIRYGGAEALHDGYDHNRGGGDGNQITSI FSDENPNACRMV
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015397 |
Heavy metal transport/detoxification group1 |
| 3 | GP047778 | Unannotated cluster |
| 4 | GP077656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cocnu_pan_p004474
Represented sequence(s):
COCNU_C3B02_v2.0
COCNU_CATD
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Mba02_g01150.1 | orthology | 0.484 | 4 | 228 | 8.81e-75 |
| XP_008795807.1 | orthology | 0.11 | 2 | 389 | 1.54e-138 |
| XP_010922268.1 | orthology | 0.0956 | 1 | 420 | 1.03e-150 |
| musac_pan_p043456 | orthology | 0.502 | 4 | 226 | 1.34e-74 |