Gene cocnu_pan_p004474


Sequence ID cocnu_pan_p004474  add to my list
Species Cocos nucifera
Alias No gene alias
Pangenome status Core (2/2)
Length 252aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 252 amino acids

>cocnu_pan_p004474_COCNU
MVPELEKAQVTELHVRMDCNGCVQKIKKAMHGIDGVYDIYVDSAQQKLTVVGRADPEKIV
KAIKKTGKIATICSHTEQVGPSGSEQPPSTEAASSSNPPATGDADQPPSEAPPAPPAEPL
QEAPSGETKAPEVNPSPEAKDATPTESKDVEEIHMVHHYPHSYIYREHWNQYPTSGSEIR
HEAPYHVAHSYSSYRPSPHATGYGHHQSAPQDIRYGGAEALHDGYDHNRGGGDGNQITSI
FSDENPNACRMV



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP047778 Unannotated cluster
4 GP077656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cocnu_pan_p004474



Represented sequence(s):
COCNU_CATD
COCNU_C3B02_v2.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Mba02_g01150.1 orthology 0.484 4 228 8.81e-75
XP_008795807.1 orthology 0.11 2 389 1.54e-138
XP_010922268.1 orthology 0.0956 1 420 1.03e-150
musac_pan_p043456 orthology 0.502 4 226 1.34e-74