Gene cocnu_pan_p005203


Sequence ID cocnu_pan_p005203  add to my list
Species Cocos nucifera
Alias No gene alias
Pangenome status Core (2/2)
Length 468aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 468 amino acids

>cocnu_pan_p005203_COCNU
MSKEDNINFLKIQTCVLKVNIHCDGCKKKVKKLLHKIEGVYQTNIDAEQGKVIVSGNVDP
ATLIKKLNKAGKHAEFWGSKGGNNQNLSNQLQKLQLGSGKGQQKDNGKLQKGGGWGGGGG
GKDQKSQQPTPQQLQLLQQQMKGFKDMKFPQLKDLKLPFQKDQKQVKFSLPPEGDGDEGS
DCDDEFDEFDDEDDFDDMDGFDDDFDYDPKMMKPVNVQPNWNGMANDKKGGGGGGGGGGG
GGGNGKKGGGAIEIPVQNKAMGGNNGSGGGKKGGGKNGGGPQDGKNGGGNNNKGAPNGNG
NGGNNANNGNPSNGGKKGGGKNDGVGGVQPMGNLPNMMGQGFQGMDLGQMGNMHRAPMGH
MGNIPAGAAVQGLPAGAVPPGYFQGGMVAPEMIAAANPYHHHQQQQQYMAALMQQQRMMM
NGQAGAAGYPPAMAYGYGRPAYMPMPPPHGDSYTNFFSDENPNSCSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP468394 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cocnu_pan_p005203



Represented sequence(s):
COCNU_C3B02_v2.0
COCNU_HT001RO02_12PF04590.2
COCNU_HT001RO02_12PF04590.1
COCNU_CATD
Cnu_10747-RA
Download sequences FASTA

  1. 2. 3.
1. COCNU_HT001RO02_12PF04590.2 0.00 -0.00 0.35
2. COCNU_HT001RO02_12PF04590.1 -0.00 0.00 0.35
3. Cnu_10747-RA 0.35 0.35 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Mba08_g00430.1 orthology 0.398 4 - -
Mba08_g07910.1 orthology 0.476 4 - -
Mba11_g17720.1 orthology 0.531 4 226 7.54e-70
XP_008793679.1 orthology 0.0829 2 469 4.14e-163
XP_010931956.1 orthology 0.0404 1 556 4.29e-197
musac_pan_p000711 orthology 0.382 4 278 1.12e-88
musac_pan_p017513 orthology 0.93 3 - -
musac_pan_p017535 orthology 0.529 4 - -
musac_pan_p026837 orthology 0.488 4 - -