Gene cocnu_pan_p006778


Sequence ID cocnu_pan_p006778  add to my list
Species Cocos nucifera
Alias No gene alias
Pangenome status Core (2/2)
Length 383aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 383 amino acids

>cocnu_pan_p006778_COCNU
MAIISPPYLEGISVLKPPLPLSILLSECHTAPSHETHQQYTNIFPTLPSFLSPSLPFLSL
YIPLSLSPLHFSSFPSLFPLPPSLYSLLSLMASAEEGPEPLKYQTLTLKVSIHCEGCKKK
VKKVLHSIEGVYKTTVDSQQQKVIVIGNVEAETLIKKLLKTGKHAELWPEKKPNNPSGGG
GGGGKKNKNKNKASGKPNEPSETPESNQTPSGEDSPPDFPANPDGNASNTGGKDSPKADN
KETGNSPPSGKQDGGGAPAAAGSGGGAPGGSGGGGKKKKKGQKENSGGGGGGGSEGQGVS
EGMVGKPGSGGGVVSLPAFSYAVYPTSQPPAYVVSYSTVQPSASYGGACYPMSMNQSSYF
YSTATPGSCYIFSDENANACRIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cocnu_pan_p006778



Represented sequence(s):
COCNU_C3B02_v2.0
COCNU_CATD



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Mba02_g04300.1 orthology 0.638 3 181 8.65e-55
Mba09_g27230.1 orthology 0.677 3 - -
Mba11_g12300.1 orthology 0.6 3 - -
XP_010931631.1 orthology 0.0708 1 383 3.95e-133
musac_pan_p013541 orthology 0.67 3 - -
musac_pan_p014845 orthology 0.999 3 - -
musac_pan_p029076 orthology 0.623 3 197 4.78e-60
musac_pan_p032387 orthology 0.587 2 - -