Gene cocnu_pan_p006778
| Sequence ID | cocnu_pan_p006778 add to my list | ||
|---|---|---|---|
| Species | Cocos nucifera | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 383aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 383 amino acids
>cocnu_pan_p006778_COCNU MAIISPPYLEGISVLKPPLPLSILLSECHTAPSHETHQQYTNIFPTLPSFLSPSLPFLSL YIPLSLSPLHFSSFPSLFPLPPSLYSLLSLMASAEEGPEPLKYQTLTLKVSIHCEGCKKK VKKVLHSIEGVYKTTVDSQQQKVIVIGNVEAETLIKKLLKTGKHAELWPEKKPNNPSGGG GGGGKKNKNKNKASGKPNEPSETPESNQTPSGEDSPPDFPANPDGNASNTGGKDSPKADN KETGNSPPSGKQDGGGAPAAAGSGGGAPGGSGGGGKKKKKGQKENSGGGGGGGSEGQGVS EGMVGKPGSGGGVVSLPAFSYAVYPTSQPPAYVVSYSTVQPSASYGGACYPMSMNQSSYF YSTATPGSCYIFSDENANACRIM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cocnu_pan_p006778
Represented sequence(s):
COCNU_C3B02_v2.0
COCNU_CATD
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Mba02_g04300.1 | orthology | 0.638 | 3 | 181 | 8.65e-55 |
| Mba09_g27230.1 | orthology | 0.677 | 3 | - | - |
| Mba11_g12300.1 | orthology | 0.6 | 3 | - | - |
| XP_010931631.1 | orthology | 0.0708 | 1 | 383 | 3.95e-133 |
| musac_pan_p013541 | orthology | 0.67 | 3 | - | - |
| musac_pan_p014845 | orthology | 0.999 | 3 | - | - |
| musac_pan_p029076 | orthology | 0.623 | 3 | 197 | 4.78e-60 |
| musac_pan_p032387 | orthology | 0.587 | 2 | - | - |