Gene cocnu_pan_p020181
| Sequence ID | cocnu_pan_p020181 add to my list | ||
|---|---|---|---|
| Species | Cocos nucifera | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 316aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 316 amino acids
>cocnu_pan_p020181_COCNU MGEKEEKGEEKPKKGDGEKKEGEGEKKKEGGGGGKKEDGPPAVVLKVDMHCEGCAEKIKR SVKRLEGVEGVKADTAANKLTVLGKADPWKLKERVETKIRRKVDIISPANPPKKDAAAGD AKKSDDAKPKAPPASTVVLKLRLHCEGCIQKIRRTIRKIKGVDDVSFDVPKDLVTVKGTM DAKSLPAILKEKLKRSVDIVQPKKDDGGGGGEKKEKGGEKKEKGGDGGGGEKKEKGGDGG GGEKKEKGDGGGGEKKDGGKKDDEGKAAPPAAALVAAAPVSEVNRMDYYGPYGYRIEMVH PPQMFSDENPNACSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP467000 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for cocnu_pan_p020181
Represented sequence(s):
COCNU_C3B02_v2.0
COCNU_CATD
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Dr03735 | orthology | 0.447 | 3 | 252 | 8.43e-83 |
| Mba04_g23570.1 | orthology | 0.725 | 3 | - | - |
| Mba05_g07210.1 | orthology | 0.612 | 3 | - | - |
| Mba09_g18610.1 | orthology | 0.703 | 3 | - | - |
| XP_010918668.1 | orthology | 0.0798 | 1 | - | - |
| XP_010918671.1 | orthology | 0.0798 | 1 | 391 | 3.22e-137 |
| musac_pan_p015139 | orthology | 0.665 | 3 | - | - |
| musac_pan_p024796 | orthology | 0.472 | 2 | - | - |
| musac_pan_p030150 | orthology | 0.77 | 3 | - | - |
| musac_pan_p036884 | orthology | 0.617 | 3 | - | - |