Gene cucsa_pan_p004862
| Sequence ID | cucsa_pan_p004862 add to my list |
|---|---|
| Species | Cucumis sativus |
| Alias | No gene alias |
| Pangenome status | Core (3/3) |
| Length | 313aa |
Length: 313 amino acids
>cucsa_pan_p004862_CUCSA MGVSIKDASFLNEDTVEDGDFSSEDSEFESESESGSGSEEEEEEDVELSEPSKNAIYNAD GLLDKLGDISWPENVEWIHKLTFDIEQEKEVDVNDDLTRELAFYTQALQGTRMALEKFQS LGLPFLRPSDYYAEMVKTDTHMQKVKGRLLSEQRKMEEAEERRKAREAKKLAKEIQAQKQ KERAKQKKEEIESVKKWRKQRQKNNFAGGDKGGDMDFSFEDGKTFERSGGKKRPGVSPGD RSGGKARHGGGGGGGGGGGKGKIPKKKRDFRDSKFGFGGRKSLKKQNTADTTNDIRGFNN GSLSSNKRRKKSD
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Unknown function duf1138 family
GP002478 |
Unknown function duf1138 family |
| 2 | GP018276 | Unannotated cluster |
| 3 | GP042981 | Unannotated cluster |
| 4 | GP075980 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Eukaryotic rRNA processing
IPR008610
|
Eukaryotic rRNA processing | Family |
Figure 1: IPR domains for cucsa_pan_p004862
Represented sequence(s):
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Cg9g025540.1 | orthology | 0.457 | 5 | 293 | 6.26e-99 |
| Cg9g025620.1 | orthology | 0.48 | 7 | - | - |
| Cm168920.1 | orthology | 0.49 | 6 | - | - |
| Cm169010.1 | orthology | 0.471 | 5 | 290 | 1.71e-97 |
| Cs9g15980.1 | orthology | 0.456 | 5 | - | - |
| Cs9g16070.1 | orthology | 0.473 | 5 | 295 | 4.71e-100 |
| FvH4_7g28160.1 | orthology | 0.475 | 4 | 300 | 8.37e-102 |
| MELO3C005417.2.1 | orthology | 0.029 | 1 | 476 | 3.38e-171 |
| Manes.06G137800.1 | orthology | 0.468 | 5 | 301 | 2.55e-102 |
| maldo_pan_p003250 | orthology | 0.445 | 4 | 287 | 1.73e-96 |
| maldo_pan_p017357 | orthology | 0.434 | 4 | - | - |
| orange1.1t05624.1 | orthology | 0.48 | 7 | - | - |
| thecc_pan_p002991 | orthology | 0.318 | 2 | 330 | 7.64e-114 |