Gene cucsa_pan_p012118


Sequence ID cucsa_pan_p012118  add to my list
Species Cucumis sativus
Alias No gene alias
Pangenome status Core (3/3)
Length 95aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 95 amino acids

>cucsa_pan_p012118_CUCSA
MSQTTVLKVAMSCQGCVGAVKRVLGKLEGVETYDIDIDAQKVTVKGNVERDVVFQTVSKT
GKKTAYWEEDASAAPAATPAPAEAEAKPAEPLAAI


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP239638 Unannotated cluster
3 GP341755 Unannotated cluster
4 GP463817 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for cucsa_pan_p012118



Represented sequence(s):
CUCSA_PI183967
evm.model.Chr5.2605
CUCSA_Gy14_v2.0
CsGy5G025890.1
CUCSA_ASM407_v2.0
KGN52199
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
FvH4_7g05820.1 orthology 0.32 3 108 7.86e-33
MELO3C012358.2.1 orthology 0.0568 1 168 3.89e-56
maldo_pan_p006752 orthology 0.336 3 - -
maldo_pan_p024825 orthology 0.349 3 125 2.85e-39