Gene ipotf_pan_p002253


Sequence ID ipotf_pan_p002253  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 295aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 295 amino acids

>ipotf_pan_p002253_IPOTF
MAASEPPPDEQPPPQFPPPLPYKTWVLKVSIHCQACKRKVKKVLQSIEGVYITDIDEKQH
KVTVTGNVEADALIKKLIRSGKNAEMWHEKSSFKEKKSGNPNQRPEGAKSNENSDEDDDN
NEEEDDGKAGENNVDGQKQKTGGPSVRFDVPPPGNAGGGGAPPKKKKKKKKKKSSGAAAP
AGSNNAPPGNAGPETSRMGPPPLHGVDPGSLGHPYAPPAHQYPPSYGAPQQGYVVSYNAA
PHPGGGGGGAPTYYYAPSSPYTYAYTRAEVHSMRCRPLDSFEILSDENPNACYIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p002253



Represented sequence(s):
IPOTF_NSP306
itf01g28710.t2
IPOTF_Y22
Itr.Sc0000023.14
Itr.Sc0000023.13
Download sequences FASTA

  1. 2. 3.
1. itf01g28710.t2 0.00 2.06 12.49
2. Itr.Sc0000023.14 2.06 0.00 9.50
3. Itr.Sc0000023.13 12.49 9.50 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
HanXRQChr03g0080771 orthology 0.768 2 - -
HanXRQChr13g0411351 orthology 0.766 2 152 3.9e-44
itb01g28440.t1 orthology 0.0176 1 441 1.12e-157