Gene ipotf_pan_p006474


Sequence ID ipotf_pan_p006474  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 310aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 310 amino acids

>ipotf_pan_p006474_IPOTF
MKGIDVFCASQAATAIRSTMEEITAVASSSSSAAIQLGGGGGGRAIDRFNPIITDSRRRT
APVPKPPAQSPGGFGKTKKDKISKSSKSNNKKKNSRKAAASEESGGGGWRCTKPGGFITP
QSSSRYLLNENEDDKDYFLDVISDFNPILKLDDPNNHTKNLQQLSDQSGPSHTPLPLPLP
PSSSSPPPPSRSTDQVVVVLRVSLHCRGCERKMRKHLSRMQGVSSFNIDFVAKKVTVVGD
VTPLGVLASISKVKNAQLWSPAVAGSSIPAPVSLSNSSSKTAKPPAVATVPTTNENMENI
SRNIQLISMN


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP469447 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p006474



Represented sequence(s):
IPOTF_NSP306
itf09g24290.t1
IPOTF_Y22
Itr.Sc0000019.46
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62010447-RA orthology 0.761 3 - -
AUR62030468-RA orthology 0.574 3 155 6.46e-47
Bv5_103030_anmg.t1 orthology 0.655 3 154 7.75e-45
PGSC0003DMP400030742 orthology 0.714 5 203 6.12e-64
Solyc10g085910.1.1 orthology 0.721 5 199 3.51e-62
capan_pan_p021656 orthology 0.689 4 195 9.43e-61
itb09g27700.t1 orthology 0.0309 1 444 1.47e-158