Gene ipotf_pan_p015819


Sequence ID ipotf_pan_p015819  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 330aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 330 amino acids

>ipotf_pan_p015819_IPOTF
MGEEEKKAAEKKEDPPSAGGGDEKKAEGEAKPAEESKDAPPLPPPPQEIVLRVFMHCEGC
ARKVRRCLKDFDGVEDVVTDCKTHKVVVKGEKADPVKVLERVQKKSHRQVELLSPIPVPA
PAPEEEPKKPPEEVAKPEEKKEEPQVITVVLKAHMHCEACAEAIKKRILRMKGVENVEPD
FKGSQVTVKGVFDPENLVDYVAKKTGKRAVVVKVEPKKEEAAGEEEKKAAEEGKAEEGKK
GGDGDGGEKKEGESGGGEKKEGDGEGVELAEDPKMEMKKHELYYSYYPPIQVNNNPHYHH
HQRFAAQDGGYGYGYPQMFSDENPNACSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p015819



Represented sequence(s):
IPOTF_Y22
Itr.xfSc0000442.3
IPOTF_NSP306
itf11g12240.t1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
PGSC0003DMP400045992 orthology 0.424 4 - -
PGSC0003DMP400046761 orthology 0.476 4 - -
Solyc03g097380.2.1 orthology 0.428 4 - -
Solyc06g072700.2.1 orthology 0.463 4 261 1.77e-85
capan_pan_p009765 orthology 0.479 3 - -
capan_pan_p023481 orthology 0.413 3 255 1.32e-83
capan_pan_p035442 orthology 0.51 3 - -
itb11g13550.t1 orthology 0.0472 1 409 5.46e-144