Gene ipotf_pan_p017885


Sequence ID ipotf_pan_p017885  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 298aa



Length: 298 amino acids

>ipotf_pan_p017885_IPOTF
MAKAAENQDVGMGDPEEQSSESEFETESEEEEEDQEQVVKLAEPSRNAVYNKDGLLDKLG
DISWPDKAGWIHKLSIDIDQEGEVDVNDDLARELSFYTQALQGTREAYLKFQSDGVPFLR
PSDYYAEMVKSDVHMEKVKGRLLAEKKKIEEAEERKKARENKKLAKEVQAQKQKERAQQK
KQEIESVKKWRKQRQQNGFDKNSNAELDLDLEDGKVFQRPNKKRPGVSPGDRSGGKGRPH
GGNNKKGSDKKLKGRENRNSKFGFGGKKGLKKQNTADSTNDFRGFSKSDFSSKKRRVK


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Unknown function duf1138 family
GP002478		 Unknown function duf1138 family
2 GP018276 Unannotated cluster
3 GP042981 Unannotated cluster
4 GP075980 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Eukaryotic rRNA processing
IPR008610 		Eukaryotic rRNA processing Family

IPR008610
Figure 1: IPR domains for ipotf_pan_p017885



Represented sequence(s):
IPOTF_Y22
Itr.Sc0000057.80
IPOTF_NSP306
itf12g06870.t1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G22660.1 orthology 0.59 4 223 9.26e-72
PGSC0003DMP400055292 orthology 0.465 4 254 5.14e-84
PGSC0003DMP400055391 orthology 0.449 4 - -
Solyc01g006090.2.1 orthology 0.462 4 - -
Solyc01g006170.2.1 orthology 0.447 3 254 3.72e-84
brana_pan_p006433 orthology 0.572 5 231 5.88e-75
brana_pan_p007884 orthology 0.571 6 - -
brana_pan_p012403 orthology 0.566 5 - -
brana_pan_p034179 orthology 0.553 5 - -
braol_pan_p022657 orthology 0.551 5 - -
braol_pan_p024061 orthology 0.613 6 - -
braol_pan_p030426 orthology 0.572 5 231 8.23e-75
brarr_pan_p009571 orthology 0.554 5 - -
brarr_pan_p026538 orthology 0.561 4 231 5.18e-75
brarr_pan_p031703 orthology 0.56 5 - -
capan_pan_p017109 orthology 0.544 3 176 4.07e-54
itb12g07110.t1 orthology 0.0034 1 422 3.88e-150