Gene ipotf_pan_p019321


Sequence ID ipotf_pan_p019321  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 236aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 236 amino acids

>ipotf_pan_p019321_IPOTF
MKSRRELFCASHASTAICSSMDQRRIVRPRSRPPAPPCSSHLPFHPTSFRKTPKDPSPAT
SNSPGRSSRHLLTDSTFLDQILSDSNNIQALVPYQPFETTKVQHTSGDNLAVIPSLPPPP
SPPKLPRVVCNPSSLILDSNVKTSSSSTPTHRNHQVVELRVAIHCKGCEGKVRKHLSKME
GVTSFSIDLDSKKVTVIGNVTPLGVLANISKVKNAQFWPSPVTSSPSSPRVTLPIR


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p019321



Represented sequence(s):
IPOTF_Y22
Itr.xfSc0000603.10
IPOTF_NSP306
itf07g10220.t1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Ca_4_477.7 orthology 0.78 2 - -
Ca_84_91.1 orthology 0.77 3 - -
Cc01_g12180 orthology 0.768 3 - -
Oeu040283.1 orthology 0.823 4 - -
Oeu058521.1 orthology 0.757 4 - -
PGSC0003DMP400027269 orthology 0.82 6 - -
Solyc11g073020.1.1 orthology 0.816 6 - -
capan_pan_p010270 orthology 0.774 5 - -
itb07g12040.t1 orthology 0.0249 1 444 4.7e-161