Gene ipotf_pan_p020842


Sequence ID ipotf_pan_p020842  add to my list
Species Ipomoea trifida
Alias No gene alias
Pangenome status Core (2/2)
Length 147aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 147 amino acids

>ipotf_pan_p020842_IPOTF
MRVHMDCGGCESKIRKALQKLKGVDEVDIDMAMQKVTVTGWADQKKVLKTVRKTGRRAEI
WQFPFNNPEMVNHNNHVAGYYPQQSYGGPATFHCTSQPPSSSYNYYKHGYDNFDRSFRLG
RGNSGNIFGSRIGGTFSDENPHSCSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP078604 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for ipotf_pan_p020842



Represented sequence(s):
IPOTF_Y22
Itr.Sc0000033.85
Itr.Sc0000033.84
IPOTF_NSP306
itf02g13170.t1
itf00g39270.t1
Download sequences FASTA

  1. 2. 3. 4.
1. itf00g39270.t1 0.00 1.37 1.32 1.32
2. itf02g13170.t1 1.37 0.00 -0.00 -0.00
3. Itr.Sc0000033.85 1.32 -0.00 0.00 -0.00
4. Itr.Sc0000033.84 1.32 -0.00 -0.00 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cc05_g08310 orthology 0.556 4 176 6.97e-58
Oeu042935.1 orthology 0.464 3 196 1.13e-65
PGSC0003DMP400035470 orthology 0.387 4 154 1.64e-49
Solyc07g055010.2.1 orthology 0.399 4 204 1.2e-68
capan_pan_p019104 orthology 0.391 3 209 1.26e-70
itb02g08570.t1 orthology 0.0069 1 310 8.13e-111