Gene itb12g07110.t1


Sequence ID itb12g07110.t1  add to my list
Species Ipomoea triloba
Alias No gene alias
Length 298aa



Length: 298 amino acids

>itb12g07110.t1_IPOTR
MAKAAENQDVGMGDPEEQSSESEFETESEEEEEDQEQVVKLAEPSRNAVYNKDGLLDKLG
DISWPDKAGWIHKLSIDIDQEGEVDVNDDLARELSFYTQALQGTREAYLKFQSDGVPFLR
PSDYYAEMVKSDVHMEKVKGRLLAEKKKIEEAEERKKARENKKLAKEVQAQKQKERAQQK
KQEIESVKKWRKQRQQNGFDKNSNAELDLDLEDGKVFQRPNKKRPGVSPGDRSGGKGRPH
GGNNKKGSDKKPKGRENRNSKFGFGGKKGLKKQNTADSTNDFRGFSKSDFSSKKRRVK




Clustering Level Family ID Family Name
1
Unknown function duf1138 family
GP002478		 Unknown function duf1138 family
2 GP018276 Unannotated cluster
3 GP042981 Unannotated cluster
4 GP075980 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Eukaryotic rRNA processing
IPR008610 		Eukaryotic rRNA processing Family

IPR008610
Figure 1: IPR domains for itb12g07110.t1



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AT3G22660.1 orthology 0.588 4 191 1e-48
PGSC0003DMP400055292 orthology 0.462 4 219.5 2.9e-57
PGSC0003DMP400055391 orthology 0.446 4 - -
Solyc01g006090.2.1 orthology 0.46 4 219.9 2.2e-57
Solyc01g006170.2.1 orthology 0.444 3 - -
brana_pan_p006433 orthology 0.57 5 231 8.61e-75
brana_pan_p007884 orthology 0.569 6 - -
brana_pan_p012403 orthology 0.563 5 - -
brana_pan_p034179 orthology 0.551 5 - -
braol_pan_p022657 orthology 0.549 5 - -
braol_pan_p024061 orthology 0.61 6 - -
braol_pan_p030426 orthology 0.57 5 231 1.2e-74
brarr_pan_p009571 orthology 0.551 5 - -
brarr_pan_p026538 orthology 0.558 4 231 7.58e-75
brarr_pan_p031703 orthology 0.557 5 - -
capan_pan_p017109 orthology 0.542 3 176 4.2e-54
ipotf_pan_p017885 orthology 0.0034 1 423 1.3e-150