Gene itb12g07110.t1
Sequence ID | itb12g07110.t1 add to my list |
---|---|
Species | Ipomoea triloba |
Alias | No gene alias |
Length | 298aa |
Length: 298 amino acids
>itb12g07110.t1_IPOTR MAKAAENQDVGMGDPEEQSSESEFETESEEEEEDQEQVVKLAEPSRNAVYNKDGLLDKLG DISWPDKAGWIHKLSIDIDQEGEVDVNDDLARELSFYTQALQGTREAYLKFQSDGVPFLR PSDYYAEMVKSDVHMEKVKGRLLAEKKKIEEAEERKKARENKKLAKEVQAQKQKERAQQK KQEIESVKKWRKQRQQNGFDKNSNAELDLDLEDGKVFQRPNKKRPGVSPGDRSGGKGRPH GGNNKKGSDKKPKGRENRNSKFGFGGKKGLKKQNTADSTNDFRGFSKSDFSSKKRRVK
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Unknown function duf1138 family
GP002478 |
Unknown function duf1138 family |
2 | GP018276 | Unannotated cluster |
3 | GP042981 | Unannotated cluster |
4 | GP075980 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Eukaryotic rRNA processing
IPR008610
|
Eukaryotic rRNA processing | Family |
Figure 1: IPR domains for itb12g07110.t1
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
AT3G22660.1 | orthology | 0.588 | 4 | 191 | 1e-48 |
PGSC0003DMP400055292 | orthology | 0.462 | 4 | 219.5 | 2.9e-57 |
PGSC0003DMP400055391 | orthology | 0.446 | 4 | - | - |
Solyc01g006090.2.1 | orthology | 0.46 | 4 | 219.9 | 2.2e-57 |
Solyc01g006170.2.1 | orthology | 0.444 | 3 | - | - |
brana_pan_p006433 | orthology | 0.57 | 5 | 231 | 8.61e-75 |
brana_pan_p007884 | orthology | 0.569 | 6 | - | - |
brana_pan_p012403 | orthology | 0.563 | 5 | - | - |
brana_pan_p034179 | orthology | 0.551 | 5 | - | - |
braol_pan_p022657 | orthology | 0.549 | 5 | - | - |
braol_pan_p024061 | orthology | 0.61 | 6 | - | - |
braol_pan_p030426 | orthology | 0.57 | 5 | 231 | 1.2e-74 |
brarr_pan_p009571 | orthology | 0.551 | 5 | - | - |
brarr_pan_p026538 | orthology | 0.558 | 4 | 231 | 7.58e-75 |
brarr_pan_p031703 | orthology | 0.557 | 5 | - | - |
capan_pan_p017109 | orthology | 0.542 | 3 | 176 | 4.2e-54 |
ipotf_pan_p017885 | orthology | 0.0034 | 1 | 423 | 1.3e-150 |