Gene maize_pan_p000549


Sequence ID maize_pan_p000549  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Dispensable (3/4)
Length 489aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 489 amino acids

>maize_pan_p000549_MAIZE
MSKEDVLKVQTLMLRVNIHCDGCEKKVKKTLHKIDGVYQSSIDAEQGKVTVSGLLDPDTI
IRKLNKAGKPAQLWGSKPGITQNAYHGGGKAHSKDAGGGKSHSKDSGGGKGHSKDAGGGK
AQKGGAGGGGHKGPGGGGGGGGGVGNPKMVMPQPTPQQLQQLQQQLQMKGLKLPPHLLGG
NMPAFPAAAPMKDPKSVKFALPEDNFDDYGSEFDDDFDDGFDDDEDDYDDDGLDDDVYGD
PKMMMKPMAVPPPAGGGDKKGGGGKKGGGGGNEIPVQIKGNNHGGAGGQPHNAKGGAPGG
GAHLGQGKKGGGSAAAVGVGGPMGGMLPQQGMMRPPNILGGAGAGFPSTAQMGGGPMGMP
VGHPHMGIMQQGGGGGGGGMPGLGFHPGLGGGGMHSGADMLQAAAASGNPVAQQQYMALM
QQQQQQMMMMQQQQQQHGNGGAGYPAAMGYGYGRPPMHYPMGYPVLPPHSHAEPYNIFSD
ENANSCSLM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP141523 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p000549



Represented sequence(s):
MAIZE_PH207_v1.0
Zm00008a018469_T01
MAIZE_CML247_v1.0
Zm00006a020736
MAIZE_B73_v4.0
Zm00001d053438
Unrepresented genome(s):
MAIZE_Mo17_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.04G0014270-1A orthology 0.108 1 511 9.96e-179
Sspon.04G0014280-2C orthology 0.134 1 - -
Sspon.04G0027130-1B orthology 0.117 1 - -
Sspon.04G0037020-1D orthology 0.143 1 - -
maize_pan_p023738 ultra-paralogy 0.102 0 - -
sorbi_pan_p005063 orthology 0.114 2 470 3.69e-163