Gene maize_pan_p004302


Sequence ID maize_pan_p004302  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Core (4/4)
Length 153aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 153 amino acids

>maize_pan_p004302_MAIZE
MELEHGGDEGGDRGSESSFSSSKRSFGASSDATVSSTPSKLQALRFAEDLSLPSVQVVVM
SANMGCSHCRQRVANVVSKMNGLLDYMVDFGKKEVTVRGKVVHTKKKKKRHMRALLGAAG
AGWDDARSAAAAAASLPGGHARTLSWFWGCYSS



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP022701 Unannotated cluster
3 GP047979 Unannotated cluster
4 GP471861 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p004302



Represented sequence(s):
MAIZE_Mo17_v1.0
MAIZE_B73_v4.0
MAIZE_PH207_v1.0
MAIZE_CML247_v1.0

  1. 2. 3. 4. 5.
1. Zm00001d011955 0.00 3.42 1.35 1.35 1.35
2. Zm00006a023770 3.42 0.00 1.98 1.98 1.98
3. ZmMO1708t036000 1.35 1.98 0.00 -0.00 -0.00
4. ZmMO1708t036450 1.35 1.98 -0.00 0.00 -0.00
5. Zm00008a032576_T01 1.35 1.98 -0.00 -0.00 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
musac_pan_p022732 orthology 0.835 1 98.6 1.55e-27