Gene maize_pan_p006989


Sequence ID maize_pan_p006989  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Dispensable (3/4)
Length 255aa



Length: 255 amino acids

>maize_pan_p006989_MAIZE
MTVDELKLQARASGGHDAKDQFPVGMRVLQMVSNFTAQSTASSAAMHGHGGILGETDSPK
LQEAPFLSCDSEVADKGFWTKLKDAIHQFIKELMAPPTKSAIIGFVVGLVSWLKSLIVSD
RAPFKVIQDSLQLMGDDTIPCITLILGGNLTQGLRKLALKCVVIVAILCVRFVLLPLIGI
AVVRATYGLGFLSRDPLYRYVLMVQFVVPPAMNIGTMSQLFDIGREECSVIFLWMYLFVA
VALTAWSTVFMSVLS


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Auxin efflux carrier family
GP000355		 Auxin efflux carrier family
2 GP015273 Unannotated cluster
3 GP040583 Unannotated cluster
4 GP463648 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Membrane transport protein
IPR004776 		Membrane transport protein Family

IPR004776
Figure 1: IPR domains for maize_pan_p006989



Represented sequence(s):
MAIZE_PH207_v1.0
Zm00008a001120_T01
Zm00008a011319_T01
MAIZE_CML247_v1.0
Zm00006a001084
MAIZE_B73_v4.0
Zm00001d040149
Unrepresented genome(s):
MAIZE_Mo17_v1.0
Download sequences FASTA

  1. 2. 3. 4.
1. Zm00001d040149 0.00 2.79 2.79 6.58
2. Zm00006a001084 2.79 0.00 -0.00 9.81
3. Zm00008a001120_T01 2.79 -0.00 0.00 9.81
4. Zm00008a011319_T01 6.58 9.81 9.81 0.00