Gene maize_pan_p007146


Sequence ID maize_pan_p007146  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Core (4/4)
Length 194aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 194 amino acids

>maize_pan_p007146_MAIZE
MSSVSSSLTNFLLCCFYPSSAGHHRGGAYYYSSHPTSASTLHYHEGTFAGRRAMGRSSRP
LSLQTVELKVRMCCSGCERVVKHAVTRLRGVDSVEVDVEMEKVTVTGYVDRHRVLKEVRR
AGKKAEFWPNPDLPMHFTCAKDYFHDEESYRRTYNYYRHGYNGDKHGQLHEPHRGADPVS
NMFNDDDVNACSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP078604 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p007146



Represented sequence(s):
MAIZE_Mo17_v1.0
ZmMO1701t000154
MAIZE_CML247_v1.0
Zm00006a000137
MAIZE_PH207_v1.0
Zm00008a000140_T01
MAIZE_B73_v4.0
Zm00001d027405
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.01G0001200-1A orthology 0.0499 3 296 3.89e-103
Sspon.01G0001200-2B orthology 0.0546 2 - -
Sspon.01G0001200-3C orthology 0.0499 3 - -
Sspon.01G0001200-4D orthology 0.0504 2 - -
sorbi_pan_p008100 orthology 0.0448 1 297 3.39e-104