Gene maize_pan_p014480


Sequence ID maize_pan_p014480  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Core (4/4)
Length 358aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 358 amino acids

>maize_pan_p014480_MAIZE
MASGAAAAPVVQTVVLKVAIHCHGCKKKVRKVLRGIEGVQDVTVDASQHKVTVTGTVDAD
TLIKRLYKSGKKGVPWQCHPPAKNSEPAPEAPPAPQPAGDGGKDAAAAAAVAAADKKSEE
AVKEPQGESSEEEKKKKKKPEQEQEDGAAEKKQPEAESSKEVEKVEAKTDGGDSEGAETK
QAKGAAAEPAKEAPAAAGAANDEDEAKKSDKAKDAGTAEPAAVTTERSLPLAPAPAPKHA
YEHEYRPPYYAAPAQPVLSYHAAQRSSSVSHFAPQAQPAYSTQQAHPHQAYYSAQQPQPQ
PGKQWSPSYLYMPYPHAAAPEPYYQQDYYGPPGMHASPMHDSSYRIFDDENPNSCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p014480



Represented sequence(s):
MAIZE_PH207_v1.0
Zm00008a035342_T01
Zm00008a035343_T01
MAIZE_Mo17_v1.0
ZmMO1709t038898
MAIZE_B73_v4.0
Zm00001d047492
MAIZE_CML247_v1.0
Zm00006a029314
Download sequences FASTA

  1. 2. 3. 4. 5.
1. Zm00001d047492 0.00 1.47 1.77 0.87 2.04
2. Zm00006a029314 1.47 0.00 1.44 1.14 2.02
3. ZmMO1709t038898 1.77 1.44 0.00 1.14 2.88
4. Zm00008a035342_T01 0.87 1.14 1.14 0.00 1.71
5. Zm00008a035343_T01 2.04 2.02 2.88 1.71 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62008611-RA orthology 1 3 - -
Bv7_164120_fciq.t1 orthology 1 3 - -
evm_27.model.AmTr_v1.0_scaffold00016.303 orthology 1 1 - -