Gene maize_pan_p021681


Sequence ID maize_pan_p021681  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Core (4/4)
Length 157aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 157 amino acids

>maize_pan_p021681_MAIZE
MTLIQPSAFSGSEPRKRRRIIILMAARGFQLRLSRWFQRSHASVSQSQDEDDRGGERNGL
LRSHLDQIVPVTDFAGTSNSKALAVRVEPKTVALKVSMHCYGCARKVEKQVKKLQGVVSI
RVELESKRLTVVGDVSPTDVLECVCKVTKHAEILQAP



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p021681



Represented sequence(s):
MAIZE_CML247_v1.0
MAIZE_Mo17_v1.0
MAIZE_PH207_v1.0
MAIZE_B73_v4.0



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Dr20434 orthology 1 3 - -
Mba01_g17650.1 orthology 1 5 - -
Mba08_g26390.1 orthology 1 5 - -
XP_008776942.1 orthology 1 4 - -
XP_008809019.1 orthology 1 5 - -
XP_010925099.1 orthology 1 6 - -
XP_010939249.1 orthology 1 5 - -
cocnu_pan_p000998 orthology 1 5 - -
cocnu_pan_p007495 orthology 1 6 - -
musac_pan_p002002 orthology 1 5 - -
musac_pan_p039784 orthology 1 5 - -
sorbi_pan_p016251 orthology 0.177 1 201 1.09e-67