Gene maize_pan_p030082


Sequence ID maize_pan_p030082  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Dispensable (3/4)
Length 148aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 148 amino acids

>maize_pan_p030082_MAIZE
MGRKLGGLDRVLHCFSLSLCSSACACVHSMDEEEEDDERKALLLSSQLVQLRGFVDGAAA
KTLAFHLEPKTVELKVSMHCYGCAKKVQKHISKMDGVTSFEVDLENKKVVVVGDVTPYEV
LESVSKVKLARLWVAPDPKQQAAQSLQA


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p030082



Represented sequence(s):
MAIZE_CML247_v1.0
Zm00006a023594
MAIZE_Mo17_v1.0
ZmMO1708t035804
MAIZE_B73_v4.0
Zm00001d011731
Unrepresented genome(s):
MAIZE_PH207_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA01G0238900.1 orthology 0.401 3 - -
Sspon.03G0007600-1A orthology 0.26 3 - -
Sspon.03G0007600-3C orthology 0.26 3 - -
Sspon.03G0007600-4D orthology 0.273 2 - -
maize_pan_p020184 ultra-paralogy 0.215 0 - -
maize_pan_p032385 ultra-paralogy 0.103 0 - -
maize_pan_p044072 ultra-paralogy 0.213 0 - -
orysa_pan_p027804 orthology 0.395 3 - -
sorbi_pan_p023239 orthology 0.231 2 - -