Gene maize_pan_p030904


Sequence ID maize_pan_p030904  add to my list
Species Zea mays
Alias No gene alias
Pangenome status Dispensable (2/4)
Length 168aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 168 amino acids

>maize_pan_p030904_MAIZE
MSRFIVFVHSNTKCVHACSLNIRSFFSSVGWLVHSQTCALKVNIHCDGCEKKVKKILHKI
DGVYQSSIDAEQGKVTVSGLMDPATVIKKLNKAGKPAQLWGAKLDVVSQLQKLQLGGGGG
GGKDKQPKGGDGGAKGQQTKGGGGEGGGGKGGKDANMVLPQPTPQQMQ


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maize_pan_p030904



Represented sequence(s):
MAIZE_PH207_v1.0
Zm00008a033331_T01
MAIZE_B73_v4.0
Zm00001d017393
Unrepresented genome(s):
MAIZE_CML247_v1.0
MAIZE_Mo17_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Sspon.07G0018260-1A orthology 0.198 2 - -
Sspon.07G0018260-2B orthology 0.194 2 - -
Sspon.07G0018260-3C orthology 0.188 2 - -
maize_pan_p029456 ultra-paralogy 0.0988 0 - -
maize_pan_p038211 ultra-paralogy 0.0966 0 - -
sorbi_pan_p020173 orthology 0.175 1 - -