Gene maldo_pan_p006711


Sequence ID maldo_pan_p006711  add to my list
Species Malus domestica
Alias No gene alias
Pangenome status Core (3/3)
Length 340aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 340 amino acids

>maldo_pan_p006711_MALDO
MTKPDAFFPLFKPHHTFTQSSPLSLFPLHQSLSLSRSSMATKPAEEAPGTLKYQTWVLKV
SIHCGGCQKKVKKVLQNIEGVYTTEIDSQQHKVTVTGNVEAETLLKKLLKSGKQAELWPE
VKKAKKSKSKNNSNNNEKQPEDHNHEQDGDHDQPDKTDGGDDADDGGESDAEGGESNEAG
GESGTSPAVGAGGGNSASTGAKKKKKKKKKAQNGNSPTGGGANLGENAPPPVGSIEPYMA
GGPEMTQPMASMNLGPPVQHTYPGPYPTSMYYPPPTYGLSYNTAYPTSTSSSYFAPDPMH
TATYSHPGRFSFPLPSYSIDDDGDEDTSVNKEYGSGCYVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for maldo_pan_p006711



Represented sequence(s):
MALDO_Borkh_v3.0.a1
MDP0000511642
MDP0000205471
MALDO_GDDH13_v1.1
MD03G1282300
MALDO_HFTH1
HF02812-RA
Download sequences FASTA

  1. 2. 3. 4.
1. MDP0000205471 0.00 0.40 1.18 1.78
2. MDP0000511642 0.40 0.00 0.40 0.80
3. MD03G1282300 1.18 0.40 0.00 1.78
4. HF02812-RA 1.78 0.80 1.78 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg5g037020.1 orthology 0.996 7 134 3.08e-37
Cm177940.1 orthology 1 8 135 2.65e-37
Cs5g32830.1 orthology 1 8 134 6.56e-37
FvH4_2g25240.1 orthology 0.426 1 204 4.75e-64
FvH4_3g05420.1 orthology 0.492 1 - -
Manes.01G216400.1 orthology 0.851 3 153 4.36e-44
Manes.05G064600.1 orthology 0.923 3 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_10299.1 orthology 1 6 122 2.21e-32
cicar_pan_p013771 orthology 1 6 125 9.41e-34
maldo_pan_p033280 ultra-paralogy 0.155 0 - -
medtr_pan_p025269 orthology 1 6 124 3.68e-33
phavu.G19833.gnm2.ann1.Phvul.001G205300.1 orthology 1 7 133 2.21e-36
soybn_pan_p005697 orthology 1 7 134 8e-37
soybn_pan_p010098 orthology 1 7 - -
thecc_pan_p017549 orthology 0.989 6 156 5.11e-45
vitvi_pan_p002541 orthology 0.66 2 - -