Gene maldo_pan_p016590
| Sequence ID | maldo_pan_p016590 add to my list | ||
|---|---|---|---|
| Species | Malus domestica | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 241aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 241 amino acids
>maldo_pan_p016590_MALDO MKGMDIFCASPASTAICSSLDQRAMVRQGPGPLDHRHHYHLRDRDQLKNQPHRQTHHAPC SSQLPIDPKPFYEKCRKSFSSAQSQPRRKRSADIHDLTRTKGTNGSSSSRFLLSDSPFID WIQKPDHKNLSAAFVPPEVPSKPRGLMSSNGHSNTALKSSSTRFRHQVVVLRVSMHCKGC EGKVRKHLSKMEGVTSFSIDFPTKKVTVMGDVTPSAVLSSVSKVKKAQLWPSPTSSSPSS A
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP015837 | Unannotated cluster |
| 3 | GP040905 | Unannotated cluster |
| 4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for maldo_pan_p016590
Represented sequence(s):
MALDO_GDDH13_v1.1
MALDO_Borkh_v3.0.a1
MALDO_HFTH1
| 1. | 2. | 3. | 4. | |
|---|---|---|---|---|
| 1. MDP0000739591 | 0.00 | 2.05 | 1.25 | 1.27 |
| 2. MDP0000451434 | 2.05 | 0.00 | 3.62 | 3.68 |
| 3. MD03G1102100 | 1.25 | 3.62 | 0.00 | -0.00 |
| 4. HF40387-RA | 1.27 | 3.68 | -0.00 | 0.00 |
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| FvH4_3g34750.1 | orthology | 0.365 | 1 | 220 | 4.08e-72 |
| Manes.04G029700.1 | orthology | 0.77 | 3 | - | - |
| Manes.11G135800.1 | orthology | 0.627 | 3 | 221 | 1.13e-72 |
| cajca.ICPL87119.gnm1.ann1.C.cajan_13578.1 | orthology | 0.728 | 3 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_21421.1 | orthology | 0.685 | 3 | 216 | 8.02e-71 |
| cicar_pan_p009348 | orthology | 0.849 | 3 | 187 | 8.45e-60 |
| maldo_pan_p031809 | ultra-paralogy | 0.17 | 0 | - | - |
| medtr_pan_p012804 | orthology | 0.825 | 3 | 189 | 2.61e-59 |
| phavu.G19833.gnm2.ann1.Phvul.011G068500.1 | orthology | 0.803 | 4 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.011G068700.1 | orthology | 0.791 | 4 | 192 | 1.08e-61 |
| soybn_pan_p006620 | orthology | 0.769 | 3 | - | - |
| soybn_pan_p008062 | orthology | 0.673 | 4 | 214 | 7.87e-70 |
| soybn_pan_p029253 | orthology | 0.693 | 4 | - | - |
| soybn_pan_p035488 | orthology | 0.769 | 3 | - | - |
| soybn_pan_p037693 | orthology | 0.884 | 3 | - | - |