Gene orysa_pan_p000298


Sequence ID orysa_pan_p000298  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Core (7/7)
Length 248aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 248 amino acids

>orysa_pan_p000298_ORYSA
MAAESETPRITELHVRMDCNGCEHKIRKTLRAIDGVSEVYVDAASQKVTVVGIADPERIV
KAIRKTKRVPTIFSHTDPAAPPPPPAEGEAAPPPADAPPPEEAPAAEPAPSEAAPPPPAE
ADQAAAPPATDATVIHMVHDYPYTHDHHHGHGHHLFGRDHWPASHHPAGGMVNYGGGAPY
YAAHSYSHRASPYVSEYGYVGSPAHHEGRFYSSHDYYYPAAAGGRGKGDGSQITSMFSDE
NPNACTIS


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p000298



Represented sequence(s):
ORYSA_MH63_v1.0
OsMH_01T0193800
ORYSA_R498_IGDB_v3.0
OsR498G0100775700.01.T02
ORYSA_N22_v1.0
A2J10_01T0142500
ORYSA_IR8_v1.0
OsIR8_01T0136800
ORYSA_Kitaake_v3.1
OsKitaake01g145400.1
ORYSA_ZS97_v1.0
OsZS_01T0191500
ORYSA_Nipponbare_v7.0
LOC_Os01g20830.1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA01G0398700.1 orthology 0.0041 1 395 4.23e-141
evm_27.model.AmTr_v1.0_scaffold00003.117 orthology 1 2 57.8 4.43e-10