Gene orysa_pan_p003551


Sequence ID orysa_pan_p003551  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Dispensable (6/7)
Length 158aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 158 amino acids

>orysa_pan_p003551_ORYSA
MTIVEMSVHMDCAGCEKKIRKAIQRMEGVDDVEIDMERQKVTVNGNVEQKKVLKAVRRTG
RRAVLWPHPYTGGGVVAGGTVHVLAQQQNYHQYHPGAGVQAHAAHAARPTSSYNYYKHGY
DDSRLYGGYYHHGANSAVVGTRATDYFSDENPQSCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP078604 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p003551



Represented sequence(s):
ORYSA_ZS97_v1.0
OsZS_01T0527200
ORYSA_MH63_v1.0
OsMH_01T0531800
ORYSA_Kitaake_v3.1
OsKitaake01g331600.1
ORYSA_Nipponbare_v7.0
LOC_Os01g55320.1
ORYSA_IR8_v1.0
OsIR8_01T0332300
ORYSA_R498_IGDB_v3.0
OsR498G0102025600.01.T01
Unrepresented genome(s):
ORYSA_N22_v1.0
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Mba03_g16740.1 orthology 0.429 3 - -
ORGLA01G0256400.1 orthology 0.0174 1 319 6.16e-114
XP_008813766.1 orthology 0.54 4 189 2.24e-62
XP_010920018.1 orthology 0.553 5 188 4.8e-62
cocnu_pan_p020915 orthology 0.561 5 - -
musac_pan_p001588 orthology 0.449 3 176 2.05e-57