Gene orysa_pan_p012537


Sequence ID orysa_pan_p012537  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Core (7/7)
Length 265aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 265 amino acids

>orysa_pan_p012537_ORYSA
MVEELKESVKEEQAEKKEAAEEKPDEPQEIVLKVDMHCEGCAKKVEKSLLRFEGVENVKA
DSRSKTVVVKSRAADPSKVCERVQRKTKRRVELIFPLPPPPEEEKKEEAPAPPPEEKKEE
PPKTITVILKVQMHCDACAQILQKRISRTEGVESVETDLLNGQVVVKGVMDPAVLIESIQ
RKTRRPAVIVEEVKPREEEKKAEEEEKKPDEDKKADGIEEVKKYDFWPPVQYYVEYVYPY
PLPPPPTALVSEEFSDENPNACTVA


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015545		 Heavy metal transport/detoxification group1
3 GP040674 Unannotated cluster
4 GP070448 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p012537



Represented sequence(s):
ORYSA_R498_IGDB_v3.0
OsR498G1018391500.01.T01
ORYSA_MH63_v1.0
OsMH_10T0133300
ORYSA_Kitaake_v3.1
OsKitaake10g052300.1
ORYSA_IR8_v1.0
OsIR8_10T0058600
ORYSA_ZS97_v1.0
OsZS_10T0141800
ORYSA_Nipponbare_v7.0
LOC_Os10g14870.1
ORYSA_N22_v1.0
A2J10_05T0128200
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Dr07989 orthology 0.774 4 174 2.55e-53
Mba01_g01930.1 orthology 0.615 4 153 2.85e-46
ORGLA10G0044600.1 orthology 0.0011 1 375 1.12e-132
XP_008785647.1 orthology 0.518 3 214 3.74e-69
XP_008790335.1 orthology 0.527 3 - -
XP_010939247.1 orthology 0.524 4 206 4.17e-66
cocnu_pan_p027064 orthology 0.497 4 171 9.71e-54
cocnu_pan_p028794 orthology 0.549 3 - -
musac_pan_p010117 orthology 0.596 4 199 1.27e-63