Gene orysa_pan_p014393
| Sequence ID | orysa_pan_p014393 add to my list | ||
|---|---|---|---|
| Species | Oryza sativa | ||
| Alias | No gene alias | ||
| Pangenome status | Core (7/7) | ||
| Length | 420aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 420 amino acids
>orysa_pan_p014393_ORYSA MTKDEDFKLVKIQTHVLRVNIHCDGCKHKVKKLLQKIEGVYSVALDVDNHKVTVTGNVDS DTLIRKLTRGGKHAELWSQQKGGSNQGHKGSNNQQKQQQQQGQQQHGQQHQKQGANPSKD GNKNNNILKDQGKQGGVGGLIQGLKAFKNQHSKNQLPELDSEDDDLYDDEDDEFDDDYED DLRFLGDKMSQLGFLRQQAAAAAAANVKNKNANTATVNNHHNNVNGKKGGGGGGSAGGGN HHQNNHHQNQKNPNVINMAAANAKMANGAQKNTGAINGMMGLNHGLGTAGATPGFQGYTG FNHPSYASAGYGGLQQQHLQQQQQSNNLMASMQGYHHHPAATAAMMNNLRGLNNNMMMMH QPQQQPQMMYHRSPQISPYTAYYNPYSYYYHPGAAGYHPASNGDVETMFSDENTKGCVVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for orysa_pan_p014393
Represented sequence(s):
ORYSA_MH63_v1.0
ORYSA_IR8_v1.0
ORYSA_ZS97_v1.0
ORYSA_R498_IGDB_v3.0
ORYSA_N22_v1.0
ORYSA_Nipponbare_v7.0
ORYSA_Kitaake_v3.1
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Dr15259 | orthology | 0.887 | 3 | 114 | 4.14e-28 |
| Mba02_g23430.1 | orthology | 1 | 4 | - | - |
| Mba03_g01140.1 | orthology | 0.87 | 4 | 160 | 5.49e-45 |
| Mba10_g22160.1 | orthology | 0.92 | 4 | - | - |
| ORGLA01G0014900.1 | orthology | 0.0058 | 1 | 483 | 3.78e-170 |
| XP_008806263.1 | orthology | 0.722 | 3 | 169 | 3.83e-48 |
| XP_010916342.1 | orthology | 0.761 | 5 | 167 | 1.16e-47 |
| XP_010926063.1 | orthology | 0.746 | 4 | - | - |
| XP_019707202.1 | orthology | 0.746 | 4 | - | - |
| XP_026656869.1 | orthology | 0.769 | 4 | - | - |
| cocnu_pan_p016981 | orthology | 0.758 | 4 | - | - |
| cocnu_pan_p021838 | orthology | 0.739 | 5 | 155 | 4.54e-44 |
| cocnu_pan_p035969 | orthology | 0.739 | 5 | - | - |
| musac_pan_p029655 | orthology | 0.981 | 4 | - | - |
| musac_pan_p029948 | orthology | 0.916 | 4 | - | - |
| musac_pan_p030748 | orthology | 0.853 | 3 | - | - |
| musac_pan_p032325 | orthology | 0.852 | 4 | - | - |