Gene orysa_pan_p025103
Sequence ID | orysa_pan_p025103 add to my list | ||
---|---|---|---|
Species | Oryza sativa | ||
Alias | No gene alias | ||
Pangenome status | Core (7/7) | ||
Length | 369aa | ||
Gene Ontology |
Display term(s) (1)
|
Length: 369 amino acids
>orysa_pan_p025103_ORYSA MAAAEEGPEPLKYQTLALKVSIHCEGCKKKVKKVLHSIEGVYKTDIDVQHQKVVVIGNVS VDTLVKKLVKTGKHAEPWPEPAPPPPAAAAAANSPGGGGGGKKKKKNKNKNKNPANGQPG EPAPPAATAEVAAGGGGGGGSVPPENDDHGGSCDEASDDEGNKQGGGGGSPKTMVAGDGQ GGGAGAVAPPFAMTPHGKQPVAPPGNGNGGGGGGGGGGKKKGKKGGGGGGGGNGNGNGNA AAAAANATGDGAGAVVEASPQDAPTKPSPGNAGPLAVVDGGVFYPPATPMSYPASYYGGG GGGHMPPYVMSYSTAHPLRSSAYYYPMAGGFGGGGGGGGYLYSTAATAPPPASSYYMFSE ENANACSVM
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | GP023608 | Unannotated cluster |
3 | GP040483 | Unannotated cluster |
4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for orysa_pan_p025103
Represented sequence(s):
ORYSA_ZS97_v1.0
ORYSA_N22_v1.0
ORYSA_Nipponbare_v7.0
ORYSA_MH63_v1.0
ORYSA_Kitaake_v3.1
ORYSA_R498_IGDB_v3.0
ORYSA_IR8_v1.0
1. | 2. | 3. | 4. | 5. | 6. | 7. | 8. | 9. | 10. | |
---|---|---|---|---|---|---|---|---|---|---|
1. OsIR8_05T0034200 | 0.00 | 89.31 | 0.27 | -0.00 | 89.31 | -0.00 | 0.27 | -0.00 | -0.00 | 89.31 |
2. OsIR8_05T0034300 | 89.31 | 0.00 | 89.31 | 89.31 | -0.00 | 89.31 | 89.31 | 89.31 | 89.31 | -0.00 |
3. OsKitaake05g038100.1 | 0.27 | 89.31 | 0.00 | 0.27 | 89.31 | 0.28 | -0.00 | 0.28 | 0.27 | 89.31 |
4. OsMH_05T0042800 | -0.00 | 89.31 | 0.27 | 0.00 | 89.31 | -0.00 | 0.27 | -0.00 | -0.00 | 89.31 |
5. OsMH_05T0042900 | 89.31 | -0.00 | 89.31 | 89.31 | 0.00 | 89.31 | 89.31 | 89.31 | 89.31 | -0.00 |
6. A2J10_05T0028100 | -0.00 | 89.31 | 0.28 | -0.00 | 89.31 | 0.00 | 0.28 | -0.00 | -0.00 | 89.31 |
7. LOC_Os05g05820.1 | 0.27 | 89.31 | -0.00 | 0.27 | 89.31 | 0.28 | 0.00 | 0.28 | 0.27 | 89.31 |
8. OsR498G0509743900.01.T01 | -0.00 | 89.31 | 0.28 | -0.00 | 89.31 | -0.00 | 0.28 | 0.00 | -0.00 | 89.31 |
9. OsZS_05T0044500 | -0.00 | 89.31 | 0.27 | -0.00 | 89.31 | -0.00 | 0.27 | -0.00 | 0.00 | 89.31 |
10. OsZS_05T0044600 | 89.31 | -0.00 | 89.31 | 89.31 | -0.00 | 89.31 | 89.31 | 89.31 | 89.31 | 0.00 |
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
ORGLA05G0032900.1 | orthology | 0.0119 | 1 | 234 | 1.46e-75 |
cocnu_pan_p024954 | orthology | 0.842 | 2 | - | - |