Gene orysa_pan_p025103


Sequence ID orysa_pan_p025103  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Core (7/7)
Length 369aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 369 amino acids

>orysa_pan_p025103_ORYSA
MAAAEEGPEPLKYQTLALKVSIHCEGCKKKVKKVLHSIEGVYKTDIDVQHQKVVVIGNVS
VDTLVKKLVKTGKHAEPWPEPAPPPPAAAAAANSPGGGGGGKKKKKNKNKNKNPANGQPG
EPAPPAATAEVAAGGGGGGGSVPPENDDHGGSCDEASDDEGNKQGGGGGSPKTMVAGDGQ
GGGAGAVAPPFAMTPHGKQPVAPPGNGNGGGGGGGGGGKKKGKKGGGGGGGGNGNGNGNA
AAAAANATGDGAGAVVEASPQDAPTKPSPGNAGPLAVVDGGVFYPPATPMSYPASYYGGG
GGGHMPPYVMSYSTAHPLRSSAYYYPMAGGFGGGGGGGGYLYSTAATAPPPASSYYMFSE
ENANACSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p025103



Represented sequence(s):
ORYSA_N22_v1.0
A2J10_05T0028100
ORYSA_IR8_v1.0
OsIR8_05T0034200
OsIR8_05T0034300
ORYSA_Nipponbare_v7.0
LOC_Os05g05820.1
ORYSA_R498_IGDB_v3.0
OsR498G0509743900.01.T01
ORYSA_Kitaake_v3.1
OsKitaake05g038100.1
ORYSA_MH63_v1.0
OsMH_05T0042800
OsMH_05T0042900
ORYSA_ZS97_v1.0
OsZS_05T0044500
OsZS_05T0044600
Download sequences FASTA

  1. 2. 3. 4. 5. 6. 7. 8. 9. 10.
1. OsIR8_05T0034200 0.00 89.31 0.27 -0.00 89.31 -0.00 0.27 -0.00 -0.00 89.31
2. OsIR8_05T0034300 89.31 0.00 89.31 89.31 -0.00 89.31 89.31 89.31 89.31 -0.00
3. OsKitaake05g038100.1 0.27 89.31 0.00 0.27 89.31 0.28 -0.00 0.28 0.27 89.31
4. OsMH_05T0042800 -0.00 89.31 0.27 0.00 89.31 -0.00 0.27 -0.00 -0.00 89.31
5. OsMH_05T0042900 89.31 -0.00 89.31 89.31 0.00 89.31 89.31 89.31 89.31 -0.00
6. A2J10_05T0028100 -0.00 89.31 0.28 -0.00 89.31 0.00 0.28 -0.00 -0.00 89.31
7. LOC_Os05g05820.1 0.27 89.31 -0.00 0.27 89.31 0.28 0.00 0.28 0.27 89.31
8. OsR498G0509743900.01.T01 -0.00 89.31 0.28 -0.00 89.31 -0.00 0.28 0.00 -0.00 89.31
9. OsZS_05T0044500 -0.00 89.31 0.27 -0.00 89.31 -0.00 0.27 -0.00 0.00 89.31
10. OsZS_05T0044600 89.31 -0.00 89.31 89.31 -0.00 89.31 89.31 89.31 89.31 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA05G0032900.1 orthology 0.0119 1 234 1.46e-75
cocnu_pan_p024954 orthology 0.842 2 - -