Gene orysa_pan_p027349


Sequence ID orysa_pan_p027349  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Core (7/7)
Length 155aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 155 amino acids

>orysa_pan_p027349_ORYSA
MGVDDIIAELRVLPAKILPKKKPKQFQKVEVKVRMDCEGCERKVRKAVEEMKGVSSVEVD
AKQNKVTVTGYVEQEEVVGRLRRRAGKKAEPWPYVPYDVVPHPYAPGAYDKKAPPGYVRN
ALADPDAAPLARATEEEEKLASAFSDENPNSCAVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p027349



Represented sequence(s):
ORYSA_Nipponbare_v7.0
LOC_Os03g06080.1
ORYSA_R498_IGDB_v3.0
OsR498G0305252000.01.T01
ORYSA_N22_v1.0
A2J10_03T0040000
ORYSA_Kitaake_v3.1
OsKitaake03g044200.1
ORYSA_MH63_v1.0
OsMH_03T0047700
ORYSA_IR8_v1.0
OsIR8_03T0037000
ORYSA_ZS97_v1.0
OsZS_03T0049100
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA03G0040300.1 orthology 0 1 306 7.53e-109
XP_008807137.1 orthology 0.556 3 - -
XP_008809430.1 orthology 0.505 3 - -
XP_010920102.1 orthology 0.517 4 - -
XP_010933357.1 orthology 0.507 4 - -
cocnu_pan_p018212 orthology 0.503 4 - -
cocnu_pan_p019869 orthology 0.485 4 - -
cocnu_pan_p033502 orthology 0.515 4 - -