Gene orysa_pan_p027804


Sequence ID orysa_pan_p027804  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Core (7/7)
Length 142aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 142 amino acids

>orysa_pan_p027804_ORYSA
MGRKLGFEKVLDCFSLALCTNACVCIHSVEDDEEEAIEREALVSSQLEELVKLKDLVGGA
KTLAFHLEPKTVELRVSMHCYGCAKKVQKHISKMDGVTSFEVDLESKKVVVIGDITPYEV
LASVSKVMKFAELWVAPNSQGC


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for orysa_pan_p027804



Represented sequence(s):
ORYSA_N22_v1.0
A2J10_01T0312400
ORYSA_ZS97_v1.0
OsZS_01T0493300
ORYSA_IR8_v1.0
OsIR8_01T0308700
ORYSA_Kitaake_v3.1
OsKitaake01g305100.1
ORYSA_R498_IGDB_v3.0
OsR498G0101907100.01.T01
ORYSA_Nipponbare_v7.0
LOC_Os01g52160.1
ORYSA_MH63_v1.0
OsMH_01T0500600
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
ORGLA01G0238900.1 orthology 0.0075 1 281 2.32e-99
Sspon.03G0007600-1A orthology 0.234 5 228 5e-78
Sspon.03G0007600-3C orthology 0.234 5 - -
Sspon.03G0007600-4D orthology 0.247 4 - -
maize_pan_p020184 orthology 0.302 3 215 4e-73
maize_pan_p030082 orthology 0.395 3 - -
maize_pan_p032385 orthology 0.497 3 - -
maize_pan_p044072 orthology 0.3 3 - -
sorbi_pan_p023239 orthology 0.205 4 228 2.35e-78