Gene orysa_pan_p041403


Sequence ID orysa_pan_p041403  add to my list
Species Oryza sativa
Alias No gene alias
Pangenome status Core (7/7)
Length 1383aa



Length: 1383 amino acids

>orysa_pan_p041403_ORYSA
MLLAARGRRHPFAAARLLPVPLSSGPSFASSTTTTTSNGACSSSAADPDAVAAEVATLLS
RCSGDWRLAVSSSDLPSRLSPAAISSLVRRRPSPSSPRLHPKLLLDFFYWSSPQLAPSAP
APDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVLASIHRALSDSGHRSPAVLDVL
VDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAGI
SPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFG
FKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFM
REGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTI
TYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEM
TTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRV
EESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDL
LESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGS
VPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARN
VFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCS
SAGDLEQAMFLIEEMFLRGHASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALT
IENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRD
HCKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGNLQP
TLVALLGIFWFRRHHHILNKVVFTVFAPSLMFASLAKTVTFSDRWFMPINIGITFMAGGT
LGWIACKILKPPQHFRGMIIAFCSAGNLGNLLLIVVPAVRDEDGNPFRKRQQPLPLSWAL
LFIILGGLYIWTHTYSLMKKKRGQMYHQPNSIQGLDDSNEEHHAKKFKANGEAACADEEA
TLPVSAKLAEHNEENQMEAPLLSGESEIAKKGSWTTTNLKDTIHHVVEELMAPPTLSAIL
GFVFGLVPWLKSLVIGDGAPLRVIQDSIQLMGNGTIPCVTLILGGNLIKGLRKLEFKHTV
IIAIVCIRYVILPLVGIAVVHGAYWVGFLPHDPLYRYVLMMQFALPPAMTIGTMAQLFDV
AQEECSVIFLWTYLVSSISLTTWSMIFMSIPSLGQSAMISAFQLTQREEVEDNNTPLEKS
RSN


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Auxin efflux carrier family
GP000355		 Auxin efflux carrier family
2 GP015273 Unannotated cluster
3 GP040583 Unannotated cluster
4 GP505806 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Tetratricopeptide-like helical domain superfamily
IPR011990 		Tetratricopeptide-like helical domain superfamily Homologous_superfamily
Pentatricopeptide repeat
IPR002885 		Pentatricopeptide repeat Repeat
Membrane transport protein
IPR004776 		Membrane transport protein Family

IPR011990 IPR002885 IPR004776
Figure 1: IPR domains for orysa_pan_p041403



Represented sequence(s):
ORYSA_Kitaake_v3.1
OsKitaake07g108733.1
OsKitaake09g192900.1
ORYSA_N22_v1.0
A2J10_07T0100400
A2J10_09T0201900
ORYSA_R498_IGDB_v3.0
OsR498G0714052900.01.T02
ORYSA_ZS97_v1.0
OsZS_07T0212700
OsZS_09T0350900
ORYSA_MH63_v1.0
OsMH_07T0209800
OsMH_09T0371400
ORYSA_Nipponbare_v7.0
LOC_Os07g20510.1
LOC_Os09g38210.1
ORYSA_IR8_v1.0
OsIR8_07T0115000
OsIR8_09T0200600
Download sequences FASTA

  1. 2. 3. 4. 5. 6. 7. 8. 9. 10. 11. 12. 13.
1. OsIR8_07T0115000 0.00 16.31 1.38 14.54 0.95 13.97 -0.00 13.97 0.55 14.54 4.37 -0.00 13.97
2. OsIR8_09T0200600 16.31 0.00 14.41 2.89 13.98 2.41 16.31 2.41 17.73 2.89 171.42 16.31 2.41
3. OsKitaake07g108733.1 1.38 14.41 0.00 14.82 3.44 14.46 1.38 14.46 0.91 14.82 4.05 1.38 14.46
4. OsKitaake09g192900.1 14.54 2.89 14.82 0.00 12.23 0.47 14.54 0.47 15.26 -0.00 171.42 14.54 0.47
5. OsMH_07T0209800 0.95 13.98 3.44 12.23 0.00 11.66 0.95 11.66 0.55 12.23 4.37 0.95 11.66
6. OsMH_09T0371400 13.97 2.41 14.46 0.47 11.66 0.00 13.97 -0.00 14.49 0.47 171.42 13.97 -0.00
7. A2J10_07T0100400 -0.00 16.31 1.38 14.54 0.95 13.97 0.00 13.97 0.55 14.54 4.37 -0.00 13.97
8. A2J10_09T0201900 13.97 2.41 14.46 0.47 11.66 -0.00 13.97 0.00 14.49 0.47 171.42 13.97 -0.00
9. LOC_Os07g20510.1 0.55 17.73 0.91 15.26 0.55 14.49 0.55 14.49 0.00 15.26 4.59 0.55 14.49
10. LOC_Os09g38210.1 14.54 2.89 14.82 -0.00 12.23 0.47 14.54 0.47 15.26 0.00 171.42 14.54 0.47
11. OsR498G0714052900.01.T02 4.37 171.42 4.05 171.42 4.37 171.42 4.37 171.42 4.59 171.42 0.00 4.37 171.42
12. OsZS_07T0212700 -0.00 16.31 1.38 14.54 0.95 13.97 -0.00 13.97 0.55 14.54 4.37 0.00 13.97
13. OsZS_09T0350900 13.97 2.41 14.46 0.47 11.66 -0.00 13.97 -0.00 14.49 0.47 171.42 13.97 0.00