Gene sorbi_pan_p005326


Sequence ID sorbi_pan_p005326  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 348aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 348 amino acids

>sorbi_pan_p005326_SORBI
MASGEAEPLQYTTTALRVSIHCEGCKKKVKKVLHSIEGVYKVTVDAAQHKVTVTGNVEAD
ALLRRLHKAGKQAALWPSPPAPAAPVAEAKKPEDAATAALPAAAGDSGAKDAQDAKPKEA
EAKEKPPENSEGKEKKPAKDKKAEKGEAAAKPSKDEATKEAEVVTESKETKKGSSEPAKQ
DAAEEAGAEEPSGGGGGGGKKGKKNKKNKPKDGGEGEEAQAPAAPATAPAPDKKPPQQPS
SVPAPSPGPERPLGGAFPYYAAQPVLSYNMAHPSSSVSYYAPTPAMPMHPMPPPPPPHMV
PYGYPPYPAMVPVPAEFLYGPPGIRSSPPQESYNNMFNEDNANSCSLM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p005326



Represented sequence(s):
SORBI_BTx623_v3.1.1
Sobic.002G412400.1
SORBI_Tx430_v1.0
3381.casb004g104370.635.1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62008611-RA orthology 1 5 - -
Bv7_164120_fciq.t1 orthology 1 5 - -
Sspon.02G0001280-1A orthology 0.135 1 342 8.37e-117
Sspon.02G0001280-1P orthology 0.144 1 - -
Sspon.02G0001280-2C orthology 0.13 1 - -
Sspon.02G0001280-3D orthology 0.145 1 - -
evm_27.model.AmTr_v1.0_scaffold00016.303 orthology 1 3 - -
maize_pan_p029987 orthology 0.227 2 - -
maize_pan_p037490 orthology 0.233 2 - -