Gene sorbi_pan_p010782


Sequence ID sorbi_pan_p010782  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 471aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 471 amino acids

>sorbi_pan_p010782_SORBI
MSRQDILKVQTLELKVPIHCDGCLKKVKKIVQKIDGVYQSSVDAALGKVTVTGLMDPETV
ITKIHKSGKPVRVWGEKPGVPLEVQLENLKLSSGGNGKGQQQPKDDAGGKDQGQGKQPKG
AGAGGGGAAAGAGGAKEAKMVAPTPQRFEQMTTLLPIPMGAGKMPMPMPFPAAAGKDPRM
VKFDLPNGDEFGDDDNSGFGDEFDEFDDIDFEDDGLDDDLNLDDDPAMMTMPMGGKKGGG
GGAQQPPQNGKGGVGGAPGGGNQPGQGNKGRVPAGAGLGGPMMGGMLPPACGMTMRPPHM
TGAGGGAGFPGMGSMGGGRPLGGMPMAMGHPGMGGAGMQPGSGSAHGKPAGGMPMHPGMG
SAGMHPGKGGAHGKAAGGMPMGGMPAPGFFPGGSMPAGQEMLAMSQLPHGHHHGHGHGGQ
AYPPPPASGYGYGYGRPPMLQYPPPPPPYYYAIPPQDNFFSDENPNGCSVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p010782



Represented sequence(s):
SORBI_BTx623_v3.1.1
Sobic.005G033600.2
SORBI_Tx430_v1.0
3381.casb012g202690.635.2
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
maize_pan_p006690 orthology 0.346 1 - -
sorbi_pan_p003695 ultra-paralogy 0.165 0 - -
sorbi_pan_p004143 ultra-paralogy 0.15 0 - -