Gene sorbi_pan_p013497


Sequence ID sorbi_pan_p013497  add to my list
Species Sorghum bicolor
Alias No gene alias
Pangenome status Core (2/2)
Length 415aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 415 amino acids

>sorbi_pan_p013497_SORBI
MISSPKIFNSARTIPCLYGGCFDSFHLLLTKLVRRGIKIALRTSPTVHDSTGTLSPPLLP
PAKHLPHLALMASEPIECQVVVLRVSIHCQGCKKKVKKVLQNINGVYRCEIDARSNKVVA
TISTKLDPYMLVSKLRKSGKQAELLPEQPPPPPPPPAAESQTQEPKNNQPDEPSKPNEPA
EKGGADTAEAAAAEPSNPREPKQSTGEAPNPAQDSKENASADETGDDTAAAAAPAPAPAQ
QGPSEAKGKAKPMQQPEMQDRQPVDARVTLEYDRGVGGGHVHRMPPPAVMSYNQVRPSVS
ASYYAPAPSPAPAPAPMPMPMPMARPGPSQGYIDEHYTPSYYNSNYNRSPAYEPEPYYYS
RPQPAPYSYQYQYQPSSSSEDYYYSAPPQRSAFSPPRDAYGEMFNDENANSCTVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for sorbi_pan_p013497



Represented sequence(s):
SORBI_BTx623_v3.1.1
Sobic.003G415900.1
SORBI_Tx430_v1.0
3381.casb001g025260.635.1
Download sequences FASTA



Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62008611-RA orthology 1 4 - -
Bv7_164120_fciq.t1 orthology 1 4 - -
Sspon.03G0027420-1B orthology 0.141 2 - -
Sspon.03G0027420-2C orthology 0.0992 2 - -
Sspon.03G0027420-3D orthology 0.101 2 387 2.81e-133
evm_27.model.AmTr_v1.0_scaffold00016.303 orthology 1 2 - -
maize_pan_p027253 orthology 0.13 2 325 3.15e-109