Gene sorbi_pan_p025481
| Sequence ID | sorbi_pan_p025481 add to my list | ||
|---|---|---|---|
| Species | Sorghum bicolor | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 364aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 364 amino acids
>sorbi_pan_p025481_SORBI MGAGKGGDGGGGGGEAAAAAPEAAQPVVLKMELHCAGCAHKVKKAIKRVPGVESIVTDVA ANRVVVAGTADAGALKARLEAKTSKPVEVVSAGGAPKKPAAAAEHAGAGEKKGDKGVSPK EEEKEKDKEKKQQASEEKKPKQETVLLKIRLHCDGCADRIRRRIYKIKGVKDVVLDGNAK DEVKVMGTMDIPNMLSYLKEKLNRDVEAVAPPAKKDGGGEGKDDKKDSGSGGDKNKGAAE AGGDDKKDKGKGIDVSAGPSTAAAAAFMAAPAGASTYHVAPPYGYVAYQQAPPPPPASYY PYPYYGNGDGMGHANPSYYHQQPQQQPDVNQQPQMAYPPYPYRFDMAPPPQLFSDENPNA CSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP070448 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for sorbi_pan_p025481
Represented sequence(s):
SORBI_Tx430_v1.0
SORBI_BTx623_v3.1.1
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Sspon.01G0003000-1A | orthology | 0.156 | 1 | - | - |
| Sspon.01G0003000-2C | orthology | 0.0465 | 1 | 456 | 1.07e-160 |
| Sspon.01G0018780-1P | orthology | 0.0466 | 1 | - | - |
| maize_pan_p023811 | orthology | 0.133 | 2 | - | - |