Gene soybn_pan_p029836
| Sequence ID | soybn_pan_p029836 add to my list | ||
|---|---|---|---|
| Species | Glycine max | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 296aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 296 amino acids
>soybn_pan_p029836_SOYBN MGAKKKNGNNKENEDNTTTTVVLKVQMHCDGCASKIIKHLRAFQGVETVKAESDAGKVTV TGKVDPTKVRDNLAEKIRKKVELVSPQPKKEKENEKDPKPNNKSENKTQDKKTKDKEVVT TAVLKVALHCQGCLDRIGKTVLKTKGVQEMAIDKEKEMVTVKGTMDVKALAENLMEKLKR KVEVVPPQKDKEGDNKEGGGGEKGSGKKKNKGGGGDKNENIEDGIEKIEHNRMEYLAPPA FGFGYGPYGGYGHGHGHGNIGGYSCVPVYPEQMHFHLHAPAPQMFSDENPNACSVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | Heavy metal transport/detoxification group1
GP015545 |
Heavy metal transport/detoxification group1 |
| 3 | GP040674 | Unannotated cluster |
| 4 | GP071484 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for soybn_pan_p029836
Represented sequence(s):
SOYBN_ZH13
SOYBN_Wm82_a2_v1.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| AT5G60800.2 | orthology | 0.805 | 4 | 192 | 8.29e-60 |
| brana_pan_p000516 | orthology | 0.905 | 5 | 215 | 7.4e-69 |
| brana_pan_p055950 | orthology | 0.865 | 5 | - | - |
| brana_pan_p067841 | orthology | 0.868 | 5 | - | - |
| braol_pan_p002717 | orthology | 1 | 5 | - | - |
| braol_pan_p017567 | orthology | 0.905 | 5 | 207 | 3.62e-66 |
| braol_pan_p040048 | orthology | 0.865 | 5 | - | - |
| brarr_pan_p004266 | orthology | 0.888 | 4 | 210 | 3.72e-67 |
| brarr_pan_p006703 | orthology | 0.872 | 5 | - | - |
| brarr_pan_p008731 | orthology | 1 | 5 | - | - |
| brarr_pan_p020733 | orthology | 1 | 5 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_21570.1 | orthology | 0.255 | 1 | 304 | 3.65e-104 |
| phavu.G19833.gnm2.ann1.Phvul.011G084200.1 | orthology | 0.193 | 2 | 332 | 1.13e-114 |
| soybn_pan_p023786 | ultra-paralogy | 0.0704 | 0 | - | - |
| soybn_pan_p027875 | ultra-paralogy | 0.308 | 0 | - | - |