GreenPhyl v5 - Gene soybn_pan

Gene soybn_pan_p037957

Sequence ID

soybn_pan_p037957 ^{add to my list}

Species

Glycine max

Alias

No gene alias

Pangenome status

Dispensable (1/2)

Length

178aa

Gene Ontology

biological_process	metal ion transport GO:0030001 - metal ion transport

Gene Sequence
Gene Classification
Domain Pattern
Pangene Composition
Homolog Predictions

178 amino acids

>soybn_pan_p037957_SOYBN
MGIFFSLSFSSKQFTGACQFASSSTAPTSNKMGALDYLSNFCTVTSTRTKQKAMQTTEIK
VRMDCDGCERRVRNAVSSIKGVKSVEVNRKESRVVVRGYVDPKKVLKRTDSENRTCNYKC
GVYAIQKMDPFQNTSGYNNGWQNDEFPSLKSMMQRQLEAENQSIGFIYQEQNISGIRI

Clustering Level	Family ID	Family Name
1	Heavy metal transport/detoxification protein superfamily GP000323	Heavy metal transport/detoxification protein superfamily
2	Heavy metal transport/detoxification group1 GP015397	Heavy metal transport/detoxification group1
3	GP040065	Unannotated cluster
4	GP463678	Unannotated cluster

This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.

ID	Name	Type
Heavy metal-associated domain, HMA IPR006121	Heavy metal-associated domain, HMA	Domain
Heavy metal-associated domain superfamily IPR036163	Heavy metal-associated domain superfamily	Homologous_superfamily

IPR006121 IPR036163

IPR domains for soybn_pan_p037957

Represented sequence(s):

SOYBN_ZH13

SoyZH13_01G125300.m1

Unrepresented genome(s):

SOYBN_Wm82_a2_v1.0

	Homology			RBH
Similar Sequence ID	Type	Evolutionary distance	Node distance	score	e-value
MELO3C020306.2.1	orthology	0.863	5	-	-
cajca.ICPL87119.gnm1.ann1.C.cajan_32061.1	orthology	0.581	1	-	-
cucsa_pan_p006945	orthology	0.868	5	-	-
medtr_pan_p021579	orthology	0.75	3	-	-
phavu.G19833.gnm2.ann1.Phvul.004G001200.1	orthology	0.613	2	-	-
soybn_pan_p022431	ultra-paralogy	0.45	0	-	-
soybn_pan_p025671	ultra-paralogy	0.468	0	-	-
soybn_pan_p036295	ultra-paralogy	0.649	0	-	-
soybn_pan_p036417	ultra-paralogy	0.58	0	-	-
soybn_pan_p038110	ultra-paralogy	0.425	0	-	-
soybn_pan_p043279	ultra-paralogy	0.695	0	-	-