Gene thecc_pan_p006423
| Sequence ID | thecc_pan_p006423 add to my list | ||
|---|---|---|---|
| Species | Theobroma cacao | ||
| Alias | No gene alias | ||
| Pangenome status | Core (2/2) | ||
| Length | 516aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 516 amino acids
>thecc_pan_p006423_THECC MSKEEFMKIQQTCVLKVNIHCDGCKQKVKKILQKIDGVYKTSIDSEQGKVTVSGNVDPAV LIKKLSKSGKHAELWGAQKANKNQNDLTSQMKNMQLDNGKGGNNKGGQKGGNNNNNNNQP KGGQPTPQQLQQLQQYQLQQLQQMKGFQDLKLPQLKDMKMPPFNQNNNQKAVRFTEEDDF IDDDYDDLDDYDDLDDDEYDDDELDDPHHPLNKMKSMMGNGPKGMPNMMMLNGNHPQLMN ALKGGQNGVVNAGGNGKKGGNGGGGGNAVPVQVLAGGGNNEGKNGNGGKKGGGGGGGGGG GGGGNNGGNQNQGGGGKNGGKNGGGGLPQEVKNGNNGGGGGANKNGGNNGGNGGKNGNNG APNGINEGFPSMGGPNGNIGQMANMNLAMGQMGNLPMSQMGQMGNMPAVQGLPAAALNGG GGRGGGGGGGGYFQGAGPDVMPGNPYHQQQYLAAMMNQRAAAAAMGGNERFQPLMYARPP PAVNYMPPYPYPYPPPQPDPYTHFFSDENTSSCNVM
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP023608 | Unannotated cluster |
| 3 | GP040483 | Unannotated cluster |
| 4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for thecc_pan_p006423
Represented sequence(s):
THECC_Matina1_6_v1.1
THECC_Criollo_v2.0
| Homology | RBH | ||||
|---|---|---|---|---|---|
| Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
| Cg9g004610.1 | orthology | 0.406 | 5 | 289 | 1.14e-91 |
| Cm080580.1 | orthology | 0.416 | 5 | 303 | 9.52e-97 |
| Cs9g06110.1 | orthology | 0.41 | 4 | 288 | 3.28e-91 |
| FvH4_4g14520.1 | orthology | 0.422 | 4 | 248 | 9.66e-76 |
| MELO3C006564.2.1 | orthology | 0.549 | 5 | 193 | 1.22e-55 |
| Manes.03G184400.1 | orthology | 0.325 | 1 | - | - |
| Manes.15G023400.1 | orthology | 0.328 | 1 | 320 | 8.47e-104 |
| cajca.ICPL87119.gnm1.ann1.C.cajan_04403.1 | orthology | 0.592 | 6 | - | - |
| cajca.ICPL87119.gnm1.ann1.C.cajan_04404.1 | orthology | 0.724 | 6 | 155 | 8.58e-42 |
| cajca.ICPL87119.gnm1.ann1.C.cajan_05307.1 | orthology | 0.463 | 5 | - | - |
| cicar_pan_p021612 | orthology | 0.527 | 5 | 197 | 4.13e-57 |
| cicar_pan_p023752 | orthology | 0.466 | 5 | - | - |
| cucsa_pan_p014828 | orthology | 0.563 | 5 | - | - |
| maldo_pan_p033071 | orthology | 0.391 | 4 | 283 | 5.8e-89 |
| medtr_pan_p010037 | orthology | 0.482 | 5 | 217 | 1.73e-64 |
| medtr_pan_p012132 | orthology | 0.523 | 5 | - | - |
| medtr_pan_p023169 | orthology | 0.897 | 4 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.003G092500.1 | orthology | 0.538 | 5 | - | - |
| phavu.G19833.gnm2.ann1.Phvul.006G153400.1 | orthology | 0.514 | 6 | 221 | 1.01e-65 |
| soybn_pan_p017385 | orthology | 0.469 | 6 | - | - |
| soybn_pan_p023921 | orthology | 0.448 | 6 | 220 | 1.88e-65 |
| soybn_pan_p028758 | orthology | 0.499 | 6 | - | - |
| soybn_pan_p032758 | orthology | 0.522 | 6 | - | - |