Gene tritu_pan_p004483


Sequence ID tritu_pan_p004483  add to my list
Species Triticum turgidum
Alias No gene alias
Pangenome status Core (2/2)
Length 152aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 152 amino acids

>tritu_pan_p004483_TRITU
MGALDHLSRLCNLTHTREAIRIKKRRPLTTVNIKVKMDCEGCERRVKSAVKSIRGVTAVV
VNRKISKVTVTGYVEPRKVLARVKRTGKTTADMWPYVPYTVATYPYVGGSYDKKAPAGLV
RNVPQAMADPAAPEVKYMNMFNDEDVTACTVM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463678 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for tritu_pan_p004483



Represented sequence(s):
TRITU_Svevo_v2.0
TRIDC5Av2G156040.1
TRITU_Zavitan_v1.1
TraesCS5A02G244000.1
TraesCS5B02G242000.1
TraesCS5D02G250700.1
Download sequences FASTA

  1. 2. 3. 4.
1. TRIDC5Av2G156040.1 0.00 0.66 4.03 1.32
2. TraesCS5A02G244000.1 0.66 0.00 3.35 0.66
3. TraesCS5B02G242000.1 4.03 3.35 0.00 2.67
4. TraesCS5D02G250700.1 1.32 0.66 2.67 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
HORVU5Hr1G069380.4 orthology 0.157 1 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_29968.1 orthology 1 4 - -
cicar_pan_p023670 orthology 0.888 2 - -
medtr_pan_p021226 orthology 0.94 2 - -
phavu.G19833.gnm2.ann1.Phvul.003G022400.1 orthology 1 3 - -
soybn_pan_p016584 orthology 1 4 - -