Gene tritu_pan_p022314


Sequence ID tritu_pan_p022314  add to my list
Species Triticum turgidum
Alias No gene alias
Pangenome status Core (2/2)
Length 151aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 151 amino acids

>tritu_pan_p022314_TRITU
MGVLDHLSDLCSMTDTKAALKLRKRRPMQTVNIKVKMDCEGCERRVKNAVKSIRGVTAVS
VNPKMSKVTVTGFVEPSKVLARVKSTGKVAEMWPYVPYSLTTYPYVGGAYDKKAPAGFVR
GAPQAMADPGAPEVRYMNMFNDEDVNSCAIM



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397
Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463678 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for tritu_pan_p022314



Represented sequence(s):
TRITU_Zavitan_v1.1
TRITU_Svevo_v2.0

  1. 2. 3. 4. 5.
1. TRIDC2Bv2G136840.1 0.00 0.66 -0.00 -0.00 -0.00
2. TRIDC2Av2G171510.1 0.66 0.00 0.66 0.66 0.66
3. TraesCS2A02G287200.1 -0.00 0.66 0.00 -0.00 -0.00
4. TraesCS2B02G304100.1 -0.00 0.66 -0.00 0.00 -0.00
5. TraesCS2D02G285700.1 -0.00 0.66 -0.00 -0.00 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
cajca.ICPL87119.gnm1.ann1.C.cajan_29968.1 orthology 1 3 - -
cicar_pan_p023670 orthology 0.942 1 - -
medtr_pan_p021226 orthology 0.994 1 - -
phavu.G19833.gnm2.ann1.Phvul.003G022400.1 orthology 1 2 - -
soybn_pan_p016584 orthology 1 3 - -