Gene tritu_pan_p039370


Sequence ID tritu_pan_p039370  add to my list
Species Triticum turgidum
Alias No gene alias
Pangenome status Core (2/2)
Length 186aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 186 amino acids

>tritu_pan_p039370_TRITU
MRTGGMLCRSQAATAVCVPGDARSMVVGRRSDRTIAEDARTLHDVRYVRLGGDGAGAARV
SSRRVAPPQPPPMPRRRGAPVAVTLPMVTKSPVETPARDTAAAKRTSATPTAAVAPGDQV
LQVVVMKVAIHCQGCAGKVRKHISKMEGVTSFSIDLESKKVTVMGHVSPAGVLESVSKVK
KAELLM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for tritu_pan_p039370



Represented sequence(s):
TRITU_Zavitan_v1.1
TraesCS1B02G292800.1
TraesCS1A02G283600.1
TraesCS1D02G282700.1
TRITU_Svevo_v2.0
TRIDC1Bv2G144640.2
TRIDC1Av2G157570.2
Download sequences FASTA

  1. 2. 3. 4. 5.
1. TRIDC1Av2G157570.2 0.00 4.40 0.54 4.40 4.97
2. TRIDC1Bv2G144640.2 4.40 0.00 3.84 -0.00 1.63
3. TraesCS1A02G283600.1 0.54 3.84 0.00 3.84 4.40
4. TraesCS1B02G292800.1 4.40 -0.00 3.84 0.00 1.63
5. TraesCS1D02G282700.1 4.97 1.63 4.40 1.63 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Dr07514 orthology 0.626 4 150 1.22e-46
HORVU1Hr1G072500.1 orthology 0.05 1 310 2.17e-109
ORGLA08G0123900.1 orthology 0.178 4 262 2.39e-90
XP_008809313.1 orthology 0.661 7 176 9.43e-57
XP_010905917.1 orthology 0.66 8 179 6.12e-58
bradi_pan_p028136 orthology 0.132 2 296 1.33e-103
cocnu_pan_p015352 orthology 0.654 8 173 9.71e-56
musac_pan_p004339 orthology 0.714 5 - -
orysa_pan_p015149 orthology 0.181 4 258 1.22e-88
orysa_pan_p029167 orthology 0.43 4 - -