Gene vitvi_pan_p005559


Sequence ID vitvi_pan_p005559  add to my list
Species Vitis vinifera
Alias No gene alias
Pangenome status Core (3/3)
Length 268aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 268 amino acids

>vitvi_pan_p005559_VITVI
MKGVDLFCASPASTAICSSMDQRSMVRRGTRPINHHNPYLSDRRRSRPLAPVPCSSRLPI
SPTLHHHKSRKSSAKQTDLRRKSSADKNDLTSPPGSSRYLLSDTPFFNLLPDSDRVSALV
PTQTARPLVPTQTTRPLVPTQTTRPLVPTQTTRPLVPTKTARPRRLNSNDSPALVSSSSA
RSHDQVVVLWVSLHCKGCEGKLRKHISKMEGVTSFSIDLATKKVTVIGDVTPLGVLASVS
RVKNAQLWPSPTSSSSPLSSSAMTSLTY



Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323
Heavy metal transport/detoxification protein superfamily
2 GP015837 Unannotated cluster
3 GP040905 Unannotated cluster
4 GP070656 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121
Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163
Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for vitvi_pan_p005559




  1. 2. 3. 4. 5. 6.
1. Vitvi06g00399.t01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00
2. VvCabSauv08_H0061F_013.ver1.0.g172280.m02 -0.00 0.00 -0.00 -0.00 -0.00 -0.00
3. VvCabSauv08_P0061F.ver1.0.g442160.m01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00
4. VvCabSauv08_H0061F_013.ver1.0.g172280.m01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00
5. VvCarFPS02VCR702_v1_PsGc_279.ver1_0.g143140.m01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00
6. VvCarFPS02VCR702_v1_Hc0161F_014.ver1_0.g625010.m01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00