Gene vitvi_pan_p005559
| Sequence ID | vitvi_pan_p005559 add to my list | ||
|---|---|---|---|
| Species | Vitis vinifera | ||
| Alias | No gene alias | ||
| Pangenome status | Core (3/3) | ||
| Length | 268aa | ||
| Gene Ontology |
 Display term(s) (1)
|
Length: 268 amino acids
>vitvi_pan_p005559_VITVI MKGVDLFCASPASTAICSSMDQRSMVRRGTRPINHHNPYLSDRRRSRPLAPVPCSSRLPI SPTLHHHKSRKSSAKQTDLRRKSSADKNDLTSPPGSSRYLLSDTPFFNLLPDSDRVSALV PTQTARPLVPTQTTRPLVPTQTTRPLVPTQTTRPLVPTKTARPRRLNSNDSPALVSSSSA RSHDQVVVLWVSLHCKGCEGKLRKHISKMEGVTSFSIDLATKKVTVIGDVTPLGVLASVS RVKNAQLWPSPTSSSSPLSSSAMTSLTY
Multiple alignment used to build consensus sequence:
| Clustering Level | Family ID | Family Name |
|---|---|---|
| 1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
| 2 | GP015837 | Unannotated cluster |
| 3 | GP040905 | Unannotated cluster |
| 4 | GP070656 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
| ID | Name | Type |
|---|---|---|
|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
|
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for vitvi_pan_p005559
Represented sequence(s):
VITVI_12X.2
VITVI_Carmenere_v1.0
VITVI_CabernetSauvignon_v1.0
| 1. | 2. | 3. | 4. | 5. | 6. | |
|---|---|---|---|---|---|---|
| 1. Vitvi06g00399.t01 | 0.00 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 |
| 2. VvCabSauv08_H0061F_013.ver1.0.g172280.m02 | -0.00 | 0.00 | -0.00 | -0.00 | -0.00 | -0.00 |
| 3. VvCabSauv08_P0061F.ver1.0.g442160.m01 | -0.00 | -0.00 | 0.00 | -0.00 | -0.00 | -0.00 |
| 4. VvCabSauv08_H0061F_013.ver1.0.g172280.m01 | -0.00 | -0.00 | -0.00 | 0.00 | -0.00 | -0.00 |
| 5. VvCarFPS02VCR702_v1_PsGc_279.ver1_0.g143140.m01 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 | -0.00 |
| 6. VvCarFPS02VCR702_v1_Hc0161F_014.ver1_0.g625010.m01 | -0.00 | -0.00 | -0.00 | -0.00 | -0.00 | 0.00 |