Gene vitvi_pan_p009555


Sequence ID vitvi_pan_p009555  add to my list
Species Vitis vinifera
Alias No gene alias
Pangenome status Core (3/3)
Length 350aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 350 amino acids

>vitvi_pan_p009555_VITVI
MATQGEAKEVVEEALEPLKYKTWVLKVSIHCEGCKKKVKKILQNIDGVYTTEIDTRQQKV
CVTGNVDVETLLKKLVKNGKHAELWPEKADHQKEKKSKNKEKQKDQESNEQEGGHDGDKE
KSTVKFEAVQEPTKNPEPKHSEAAAASGSGGGGGGGGGAKVGENGAAVKNGAAAQKEAKP
EVKKPEASPAGEAPPAAEKKVGESDACADKGGSGNGSKKKKKKGQKPNSDVGAPSSDTPA
APPGSPNPSPAPSHGPAPASTQTVYHYPPHYYAPPQPAYTVSYNTMHPSTSHEASYYATP
PPQYSYAYMHPGPWTEPPPSDFDSNPSSVHPPSDSFQFFSDENPNACSLM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for vitvi_pan_p009555



Download sequences FASTA

  1. 2. 3. 4. 5. 6.
1. Vitvi14g00163.t01 0.00 0.86 25.42 1.15 -0.00 6.22
2. VvCabSauv08_P0018F.ver1.0.g350340.m01 0.86 0.00 26.36 0.86 0.86 6.22
3. VvCabSauv08_H0018F_029.ver1.0.g099320.m01 25.42 26.36 0.00 26.36 25.42 37.18
4. VvCarFPS02VCR702_v1_PsGc_781.ver1_0.g344300.m01 1.15 0.86 26.36 0.00 1.15 5.25
5. VvCarFPS02VCR702_v1_Hc0109F_016.ver1_0.g592730.m01 -0.00 0.86 25.42 1.15 0.00 6.22
6. VvCarFPS02VCR702_v1_Hc0109F_002.ver1_0.g592040.m01 6.22 6.22 37.18 5.25 6.22 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
MELO3C015311.2.1 orthology 1 2 - -
cucsa_pan_p016664 orthology 1 2 - -
maldo_pan_p020139 orthology 1 2 - -
maldo_pan_p023511 orthology 1 2 - -
maldo_pan_p042780 orthology 1 2 - -
maldo_pan_p049042 orthology 1 2 - -
maldo_pan_p050592 orthology 1 2 - -
vitvi_pan_p043411 ultra-paralogy 0.001 0 - -