Gene vitvi_pan_p009555
Sequence ID | vitvi_pan_p009555 add to my list | ||
---|---|---|---|
Species | Vitis vinifera | ||
Alias | No gene alias | ||
Pangenome status | Core (3/3) | ||
Length | 350aa | ||
Gene Ontology |
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Length: 350 amino acids
>vitvi_pan_p009555_VITVI MATQGEAKEVVEEALEPLKYKTWVLKVSIHCEGCKKKVKKILQNIDGVYTTEIDTRQQKV CVTGNVDVETLLKKLVKNGKHAELWPEKADHQKEKKSKNKEKQKDQESNEQEGGHDGDKE KSTVKFEAVQEPTKNPEPKHSEAAAASGSGGGGGGGGGAKVGENGAAVKNGAAAQKEAKP EVKKPEASPAGEAPPAAEKKVGESDACADKGGSGNGSKKKKKKGQKPNSDVGAPSSDTPA APPGSPNPSPAPSHGPAPASTQTVYHYPPHYYAPPQPAYTVSYNTMHPSTSHEASYYATP PPQYSYAYMHPGPWTEPPPSDFDSNPSSVHPPSDSFQFFSDENPNACSLM
Multiple alignment used to build consensus sequence:
Clustering Level | Family ID | Family Name |
---|---|---|
1 | Heavy metal transport/detoxification protein superfamily
GP000323 |
Heavy metal transport/detoxification protein superfamily |
2 | GP023608 | Unannotated cluster |
3 | GP040483 | Unannotated cluster |
4 | GP070015 | Unannotated cluster |
Table 1:
This table displays which families the selected sequence belongs to in
GreenPhyl clustering
?.
ID | Name | Type |
---|---|---|
Heavy metal-associated domain, HMA
IPR006121
|
Heavy metal-associated domain, HMA | Domain |
Heavy metal-associated domain superfamily
IPR036163
|
Heavy metal-associated domain superfamily | Homologous_superfamily |
Figure 1: IPR domains for vitvi_pan_p009555
Represented sequence(s):
VITVI_12X.2
VITVI_Carmenere_v1.0
VITVI_CabernetSauvignon_v1.0
1. | 2. | 3. | 4. | 5. | 6. | |
---|---|---|---|---|---|---|
1. Vitvi14g00163.t01 | 0.00 | 0.86 | 25.42 | 1.15 | -0.00 | 6.22 |
2. VvCabSauv08_P0018F.ver1.0.g350340.m01 | 0.86 | 0.00 | 26.36 | 0.86 | 0.86 | 6.22 |
3. VvCabSauv08_H0018F_029.ver1.0.g099320.m01 | 25.42 | 26.36 | 0.00 | 26.36 | 25.42 | 37.18 |
4. VvCarFPS02VCR702_v1_PsGc_781.ver1_0.g344300.m01 | 1.15 | 0.86 | 26.36 | 0.00 | 1.15 | 5.25 |
5. VvCarFPS02VCR702_v1_Hc0109F_016.ver1_0.g592730.m01 | -0.00 | 0.86 | 25.42 | 1.15 | 0.00 | 6.22 |
6. VvCarFPS02VCR702_v1_Hc0109F_002.ver1_0.g592040.m01 | 6.22 | 6.22 | 37.18 | 5.25 | 6.22 | 0.00 |
Homology | RBH | ||||
---|---|---|---|---|---|
Similar Sequence ID | Type | Evolutionary distance | Node distance | score | e-value |
MELO3C015311.2.1 | orthology | 1 | 2 | - | - |
cucsa_pan_p016664 | orthology | 1 | 2 | - | - |
maldo_pan_p020139 | orthology | 1 | 2 | - | - |
maldo_pan_p023511 | orthology | 1 | 2 | - | - |
maldo_pan_p042780 | orthology | 1 | 2 | - | - |
maldo_pan_p049042 | orthology | 1 | 2 | - | - |
maldo_pan_p050592 | orthology | 1 | 2 | - | - |
vitvi_pan_p043411 | ultra-paralogy | 0.001 | 0 | - | - |