Gene vitvi_pan_p018179


Sequence ID vitvi_pan_p018179  add to my list
Species Vitis vinifera
Alias No gene alias
Pangenome status Core (3/3)
Length 390aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 390 amino acids

>vitvi_pan_p018179_VITVI
MTKDEDFKLLKIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYTVNIDAEQQRVTVSGSVDS
GTLIKKLVKAGKHAELWSQKSNQNQKQKTNCIKDDKNNKGQKQGLIKGLEAFKTQQKFPV
FSSEEDEDDFDDDEEDYEEEELRFLQEKANQLSLLRQQALDASNAKKGFGAIAASNNGKI
NNNVGNGNVQKKGNPNQNMGMKGSPGGIDQKTIAALKMNNPHLVGGGNINSGEVKRGNDI
NSMMGLGGFHGNGGNVAATAAALGGNSNALGGFQIQPNNGFQGSSTGFPNGGFATGHHHP
SPMLMNLNGNQYNHPSQMMMNMNMQQNRHAPMQQPQMMYHRSPFIPPSTGYYYNYSPAPS
PYTHCDTNHSGDHSASHMFSDENTSSCSIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2 GP023608 Unannotated cluster
3 GP040483 Unannotated cluster
4 GP070015 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for vitvi_pan_p018179



Download sequences FASTA

  1. 2. 3. 4. 5. 6.
1. Vitvi01g00394.t01 0.00 4.04 0.51 0.77 8.27 101.57
2. VvCabSauv08_H0000F_021.ver1.0.g002310.m01 4.04 0.00 3.77 3.49 8.63 93.87
3. VvCabSauv08_P0000F.ver1.0.g261330.m01 0.51 3.77 0.00 0.26 8.27 98.93
4. VvCarFPS02VCR702_v1_Hc0004F_011.ver1_0.g425310.m01 0.77 3.49 0.26 0.00 8.63 98.93
5. VvCarFPS02VCR702_v1_PsGc_75.ver1_0.g326420.m01 8.27 8.63 8.27 8.63 0.00 36.05
6. VvCarFPS02VCR702_v1_Hc0004F_006.ver1_0.g425060.m01 101.57 93.87 98.93 98.93 36.05 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
Cg2g033940.2 orthology 0.263 4 408 9.42e-142
Cm053230.1 orthology 0.268 5 440 4.88e-154
FvH4_4g32260.1 orthology 0.391 3 330 5.87e-111
Manes.15G126600.1 orthology 0.337 4 405 2.44e-140
Manes.17G075400.1 orthology 0.325 4 - -
cajca.ICPL87119.gnm1.ann1.C.cajan_07848.1 orthology 0.346 3 416 7.07e-145
cicar_pan_p014991 orthology 0.352 3 303 1.67e-100
maldo_pan_p009716 orthology 0.327 3 - -
maldo_pan_p033106 orthology 0.359 3 324 1.63e-108
medtr_pan_p032193 orthology 0.36 3 385 6.83e-133
orange1.1t04788.1 orthology 0.269 5 422 2.61e-147
phavu.G19833.gnm2.ann1.Phvul.007G038000.1 orthology 0.356 4 389 5.94e-134
soybn_pan_p012384 orthology 0.325 4 390 2.65e-134
soybn_pan_p023139 orthology 0.318 4 - -
thecc_pan_p016247 orthology 0.312 4 434 3.99e-152
vitvi_pan_p040075 ultra-paralogy 0.0414 0 - -