Gene vitvi_pan_p026901


Sequence ID vitvi_pan_p026901  add to my list
Species Vitis vinifera
Alias No gene alias
Pangenome status Core (3/3)
Length 160aa
Gene Ontology
Open Display term(s) (1)
biological_process
metal ion transport
GO:0030001 - metal ion transport



Length: 160 amino acids

>vitvi_pan_p026901_VITVI
MGALDYFSNLCECRSLHESRQLHKLRKLKQLQTVEIKVKMDCEGCERQVRKSVEGMKGVT
QVVIEPKLNKLTVVGYVEPKKVLHRVKHRTGKRPVMWPYVPYDEIPHPYAPGVYDRKAPP
GYVRNPSQDPQVSNLARASSTEVKYTTAFSDDNPNACIIM


Multiple alignment used to build consensus sequence:



Clustering Level Family ID Family Name
1
Heavy metal transport/detoxification protein superfamily
GP000323		 Heavy metal transport/detoxification protein superfamily
2
Heavy metal transport/detoxification group1
GP015397		 Heavy metal transport/detoxification group1
3 GP040065 Unannotated cluster
4 GP463617 Unannotated cluster
Table 1: This table displays which families the selected sequence belongs to in GreenPhyl clustering ?.


ID Name Type
Heavy metal-associated domain, HMA
IPR006121 		Heavy metal-associated domain, HMA Domain
Heavy metal-associated domain superfamily
IPR036163 		Heavy metal-associated domain superfamily Homologous_superfamily

IPR006121 IPR036163
Figure 1: IPR domains for vitvi_pan_p026901



Represented sequence(s):
VITVI_Carmenere_v1.0
VvCarFPS02VCR702_v1_PsGc_228.ver1_0.g116130.m01
VITVI_CabernetSauvignon_v1.0
VvCabSauv08_H0004F_018.ver1.0.g043290.m01
VvCabSauv08_H0004F_058.ver1.0.g045770.m01
VITVI_12X.2
Vitvi04g02170.t01
Vitvi04g02172.t01
Download sequences FASTA

  1. 2. 3. 4. 5.
1. Vitvi04g02170.t01 0.00 1.26 0.63 1.26 1.26
2. Vitvi04g02172.t01 1.26 0.00 0.63 1.26 1.26
3. VvCabSauv08_H0004F_018.ver1.0.g043290.m01 0.63 0.63 0.00 0.63 0.63
4. VvCabSauv08_H0004F_058.ver1.0.g045770.m01 1.26 1.26 0.63 0.00 -0.00
5. VvCarFPS02VCR702_v1_PsGc_228.ver1_0.g116130.m01 1.26 1.26 0.63 -0.00 0.00


Homology RBH
Similar Sequence ID Type Evolutionary distance Node distance score e-value
AUR62029504-RA orthology 0.493 1 - -