Family GP001613_V3


Family ID
E3 Ubiquitin ligase Family [OBSOLETE]
GP001613_V3 OBSOLETE  add to my list
Family name E3 Ubiquitin ligase Family
Creation date (last update: 2016-09-27 12:24:51)
Level 1
Type family
Owner greenphyl_v3
Evidence IEA:InterPro
Access public - read only
Family description / comments
Sequences 84




Level Family ID (number of sequences)
1 GP001613_V3 (84)
2
(plant-specificity: 33%) [OBSOLETE]
GP018281_V3 (49)
(plant-specificity: 44%) [OBSOLETE]
GP019886_V3 (35)
3
(plant-specificity: 33%) [OBSOLETE]
GP042986_V3 (49)
(plant-specificity: 44%) [OBSOLETE]
GP044811_V3 (35)
4
(plant-specificity: 33%) [OBSOLETE]
GP072483_V3 (49)
(plant-specificity: 44%) [OBSOLETE]
GP074416_V3 (35)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 84
Species Count (w/o splice) Count (w/ splice)
1 1
4 4
2 2
5 5
2 2
3 7
2 4
4 16
2 2
2 2
3 3
2 2
2 2
3 4
2 2
2 2
2 2
12 12
4 4
5 6


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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
84 64 (76%) 64 (76%) [67; 346; 487] ~326 269 269