Family GP000347_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 100%) [OBSOLETE]
GP000347_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:06:40)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 369
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 91%)
GP000347




Level Family ID (number of sequences)
1 GP000347_V3 (369)
2
(plant-specificity: 100%) [OBSOLETE]
GP016003_V3 (150)
(plant-specificity: 100%) [OBSOLETE]
GP017874_V3 (47)
(plant-specificity: 100%) [OBSOLETE]
GP017980_V3 (57)
(plant-specificity: 100%) [OBSOLETE]
GP019197_V3 (39)
(plant-specificity: 100%) [OBSOLETE]
GP019870_V3 (35)
(plant-specificity: 100%) [OBSOLETE]
GP022088_V3 (27)
(plant-specificity: 100%) [OBSOLETE]
GP026363_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP026950_V3 (5) GP030241_V3 (3)
3
(plant-specificity: 100%) [OBSOLETE]
GP043000_V3 (49)
(plant-specificity: 100%) [OBSOLETE]
GP046423_V3 (28)
(plant-specificity: 100%) [OBSOLETE]
GP049914_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP050100_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP050420_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP050555_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP051075_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP051747_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP052688_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP054076_V3 (5) GP057762_V3 (3) GP059933_V3 (3) GP062486_V3 (2) GP068228_V3 (2) GP068288_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP043619_V3 (43) GP056277_V3 (4) GP059932_V3 (3)
(plant-specificity: 97%) [OBSOLETE]
GP047953_V3 (20)
(plant-specificity: 100%) [OBSOLETE]
GP051082_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP051507_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP051744_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP051748_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP054078_V3 (5) GP056270_V3 (4) GP056278_V3 (4) GP056279_V3 (4) GP059941_V3 (3) GP068269_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP048277_V3 (18) GP051082_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP051302_V3 (7) GP051507_V3 (7) GP052688_V3 (6) GP056277_V3 (4) GP056278_V3 (4) GP056279_V3 (4) GP068269_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP044798_V3 (35)
(plant-specificity: 100%) [OBSOLETE]
GP048119_V3 (19) GP051082_V3 (8) GP051507_V3 (7) GP056278_V3 (4) GP068228_V3 (2) GP051747_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP053458_V3 (5) GP051507_V3 (7)
4
(plant-specificity: 100%) [OBSOLETE]
GP078056_V3 (19)
(plant-specificity: 100%) [OBSOLETE]
GP080400_V3 (10)
(plant-specificity: 100%) [OBSOLETE]
GP081517_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP081682_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP082985_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP083700_V3 (6) GP087042_V3 (4)
(plant-specificity: 100%) [OBSOLETE]
GP077070_V3 (24) GP089190_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP084256_V3 (5) GP087042_V3 (4) GP090352_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP081030_V3 (9) GP081517_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP081031_V3 (9) GP081682_V3 (8) GP103134_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP085481_V3 (5) GP103152_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP085484_V3 (5) GP103089_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP085480_V3 (5) GP090353_V3 (3) GP103090_V3 (2) GP103152_V3 (2) GP090352_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP075172_V3 (32)
(plant-specificity: 100%) [OBSOLETE]
GP084255_V3 (5) GP092792_V3 (3) GP103098_V3 (2) GP092807_V3 (3) GP103086_V3 (2) GP092793_V3 (3)
(plant-specificity: 90%) [OBSOLETE]
GP079699_V3 (12)
(plant-specificity: 100%) [OBSOLETE]
GP083707_V3 (6) GP092784_V3 (3) GP103105_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP081687_V3 (8) GP092805_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP084840_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP083703_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP083709_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP081686_V3 (8) GP081686_V3 (8) GP083707_V3 (6) GP088222_V3 (4) GP081687_V3 (8) GP088234_V3 (4) GP083709_V3 (6) GP092801_V3 (3) GP103079_V3 (2) GP083709_V3 (6) GP084255_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP085482_V3 (5) GP092832_V3 (3) GP103086_V3 (2) GP103087_V3 (2) GP103106_V3 (2) GP103119_V3 (2) GP081687_V3 (8) GP092805_V3 (3) GP084255_V3 (5) GP092832_V3 (3) GP084840_V3 (5) GP085484_V3 (5) GP103089_V3 (2) GP092807_V3 (3) GP103086_V3 (2) GP081687_V3 (8) GP088234_V3 (4) GP083709_V3 (6) GP103079_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP074841_V3 (33) GP094354_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP081032_V3 (9) GP081687_V3 (8) GP088234_V3 (4) GP092805_V3 (3) GP103111_V3 (2) GP081687_V3 (8) GP092805_V3 (3) GP084840_V3 (5) GP081687_V3 (8) GP088234_V3 (4) GP085481_V3 (5) GP103152_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP084791_V3 (5) GP084840_V3 (5)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 369
Species Count (w/o splice) Count (w/ splice)
2 2
1 1
3 3
3 3
2 2
1 1
2 2
1 1
1 1
2 2
1 1
335 335
2 3
1 1
1 1
5 6
2 2
2 2


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[Masking step 1 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
369 367 (99%) 367 (99%) [53; 233; 852] ~277 913 913