Family GP000584_V3


Family ID
Expressed or hypothetical protein group (plant-specificity: 100%) [OBSOLETE]
GP000584_V3 OBSOLETE  add to my list
Family name Expressed or hypothetical protein group
Creation date (last update: 2016-09-27 12:10:01)
Level 1
Type group
Owner greenphyl_v3
Evidence N/A
Access public - read only
Family description / comments
Sequences 235
Associated GPv4 family
Expressed or hypothetical protein group (plant-specificity: 100%)
GP000584




Level Family ID (number of sequences)
1 GP000584_V3 (235)
2
(plant-specificity: 100%) [OBSOLETE]
GP016730_V3 (95)
(plant-specificity: 100%) [OBSOLETE]
GP017824_V3 (54)
(plant-specificity: 100%) [OBSOLETE]
GP022797_V3 (19)
(plant-specificity: 100%) [OBSOLETE]
GP023302_V3 (14)
(plant-specificity: 100%) [OBSOLETE]
GP023468_V3 (15)
(plant-specificity: 100%) [OBSOLETE]
GP024027_V3 (12)
(plant-specificity: 100%) [OBSOLETE]
GP024053_V3 (10) GP027212_V3 (4) GP027214_V3 (3) GP028849_V3 (4) GP029575_V3 (3) GP032912_V3 (2)
3
(plant-specificity: 100%) [OBSOLETE]
GP044688_V3 (36)
(plant-specificity: 100%) [OBSOLETE]
GP046837_V3 (26)
(plant-specificity: 100%) [OBSOLETE]
GP049112_V3 (13)
(plant-specificity: 100%) [OBSOLETE]
GP049656_V3 (11)
(plant-specificity: 100%) [OBSOLETE]
GP053251_V3 (6) GP059829_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP047425_V3 (23)
(plant-specificity: 100%) [OBSOLETE]
GP048246_V3 (17)
(plant-specificity: 100%) [OBSOLETE]
GP049113_V3 (13)
(plant-specificity: 100%) [OBSOLETE]
GP050767_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP048099_V3 (19)
(plant-specificity: 100%) [OBSOLETE]
GP048903_V3 (14)
(plant-specificity: 100%) [OBSOLETE]
GP048706_V3 (15) GP050767_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP053223_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP049962_V3 (10) GP055690_V3 (4) GP058693_V3 (3) GP055858_V3 (4) GP056928_V3 (3) GP061278_V3 (2)
4
(plant-specificity: 100%) [OBSOLETE]
GP076358_V3 (27)
(plant-specificity: 100%) [OBSOLETE]
GP079616_V3 (12)
(plant-specificity: 100%) [OBSOLETE]
GP080824_V3 (9)
(plant-specificity: 100%) [OBSOLETE]
GP084354_V3 (5) GP086601_V3 (4)
(plant-specificity: 100%) [OBSOLETE]
GP082201_V3 (7)
(plant-specificity: 100%) [OBSOLETE]
GP083183_V3 (6)
(plant-specificity: 100%) [OBSOLETE]
GP083184_V3 (6) GP089330_V3 (3) GP102789_V3 (2) GP079616_V3 (12) GP089662_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP080308_V3 (10) GP094793_V3 (2) GP080824_V3 (9) GP092675_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP078656_V3 (16)
(plant-specificity: 100%) [OBSOLETE]
GP083200_V3 (6) GP089681_V3 (3) GP095108_V3 (2)
(plant-specificity: 100%) [OBSOLETE]
GP081372_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP081374_V3 (8) GP089681_V3 (3) GP095057_V3 (2) GP095058_V3 (2) GP083200_V3 (6) GP084354_V3 (5) GP086601_V3 (4) GP095059_V3 (2) GP080308_V3 (10) GP081374_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP079319_V3 (13) GP089625_V3 (3) GP092680_V3 (3)
(plant-specificity: 100%) [OBSOLETE]
GP079052_V3 (14)
(plant-specificity: 100%) [OBSOLETE]
GP079617_V3 (12) GP089655_V3 (3) GP080308_V3 (10) GP081374_V3 (8)
(plant-specificity: 100%) [OBSOLETE]
GP084523_V3 (5)
(plant-specificity: 100%) [OBSOLETE]
GP080350_V3 (10) GP087594_V3 (4) GP091445_V3 (3) GP087765_V3 (4) GP089324_V3 (3) GP094864_V3 (2)
Table 1: This table displays which relationship has the selected custom family with other families.






Sequence total: 235
Species Count (w/o splice) Count (w/ splice)
25 25
14 14
68 69
127 127


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[Masking step 1 details] [Masking step 2 details] [Filtration details]

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Alignment and filtration statistics:

Overall family sequences Sequences used for alignment (w/o splice) Sequences kept after filtration [min; median; max] ~average sequence length Alignment length Masked alignment length
235 235 (100%) 235 (100%) [79; 462; 1502] ~513 6 6